Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0340 ATGGCTCAGCTGCAGAGCCAAGAGCAGCAACAGCCACCTATTGATCATGCCCAGAAGACCAAGACTCTCATTTCTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTACCACGGCGCTGATGATGCTGCCGGTGATGACCGTGAATGCGAGGTCCCTGATGGGAGTGAGGGTGGAGCCGGATCTGAGGAGAAACAGGGATCCGCCCATGCTGACAATATTTTGGATAATACAGGAAATTCTAAAGAAGATTTGTTGAAGGATCTTGAAGATGCATTACTGAAACAACGAACAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTATAAAAGTCAGATTCAGCATCGGTTAAATGAACTAGAAGGATTGCCTTCAAGTAGGGGAGAGGACTTGCAGACAAAGTGCCTGCTTGAACTGTATGGACTGAAGCTAGAAGAGTTGCAGAGGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCGTATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCTCTGTATGGTGTTGGAGATCCCTTTTCCATGGATGCTGATGATCAATTAAGGAAGAAAAGAGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATTGACACCAGAAAAAGAAAATTTTTTGCGGAAATACTTAATGCTGTTCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAAAGAAATGATGGAGTCCAGGCATGGCATGGAAGGCAAAGACAACGCGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAACAGATGGCATCGAACCTTTGGAAGACTCAGAAGCTGAACTACCTGAGTCAGATGGTTCAAAGAATGGAATATCCAAGGAATCACCTACTGAGGAATATGCTGATATGGTAGATTCTGATCATAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAGTTAAGATCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTCTGTTCAATAACAACCTAAATGGAATTTTGGCAGACGAAATGGGCCTGGGGAAGACAATACAAACAATTTCTCTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGAAGAGCGAAAAGCAATTAAGGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCATTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTCGACTCTGGTTATCACATCCAACGTAGACTCCTGCTGACTGGAACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTTAACTCAGTTCAACACTTTGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTACTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATACTCAAAAGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCGAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGTTGAACATAATATGTGGAACAAGGATGAAATTGTCCGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTCTGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTGCTGCGGCAGTTCAATGCTCCTGATTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTCGGTCTAAACCTGCAAACAGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAGAAAGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATCGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAGATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTGCCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTATAGATCTCGTCTCATGGAAGAACATGAAGTGCCAGAATGGGTATACGCTGCAACGGTTAACAAGGATGACAAGGTCAAAAGTTCTGCTTTTGGTAGTGTTACTGGTAAGCGGAAAAGAAAGGAAGTAGTATATGCTGATACGTTAAGTGATCTCCAATGGATGAAAGCTGTGGAGAATGGGGAAGATGTGTCAAGGTTTTCTGTTAAAGGGAGAAGAAGAGACCACCTGCCATCGGACAGCAACACAACTGCTGGTGATAATGTTGGGGTGGAAGAAAGTTTTTCTGAAATACAAAATGAAAGCTTCTCCATGGGGAAAGAGAGATCAAGCGAAGACTCTTTCCATGGGACCCCTGGTCCTGCCCCAAAAAGACTCAGGCAGGAAGGAATAACCACCCCAAAACATGAATACGAGGGCTTCAGAGGAAGTGGTTTGAATGAGCATATGTTTTCATGGAATACCATTAGAAAGAAAAGATCAAGCAGTCTCACTCAGAGCTCTTCGTTTTCTGATTCTAGAGGGCAGAGTTCTAATGGAAGAGGAAATTGGAGCTGA 3378 0.4266 MAQLQSQEQQQPPIDHAQKTKTLISALNLVSRNLPLPPDLFNTVSSIYHGADDAAGDDRECEVPDGSEGGAGSEEKQGSAHADNILDNTGNSKEDLLKDLEDALLKQRTSCVSGYKLKEERESRYKSQIQHRLNELEGLPSSRGEDLQTKCLLELYGLKLEELQRKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLRRPLYGVGDPFSMDADDQLRKKRDAERLSKLEEEEKNQIDTRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEAELPESDGSKNGISKESPTEEYADMVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLEERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQHFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKSDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVVEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPEWVYAATVNKDDKVKSSAFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRFSVKGRRRDHLPSDSNTTAGDNVGVEESFSEIQNESFSMGKERSSEDSFHGTPGPAPKRLRQEGITTPKHEYEGFRGSGLNEHMFSWNTIRKKRSSSLTQSSSFSDSRGQSSNGRGNWS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0340 1125 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Acco04g0340 1125 SMART helicmild6 756 840 IPR001650 -
Acco04g0340 1125 SMART ultradead3 413 603 IPR014001 -
Acco04g0340 1125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Acco04g0340 1125 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
Acco04g0340 1125 MobiDBLite consensus disorder prediction 1011 1085 - -
Acco04g0340 1125 Coils Coil 931 951 - -
Acco04g0340 1125 CDD SF2_C_SNF 718 851 - -
Acco04g0340 1125 Coils Coil 211 231 - -
Acco04g0340 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Acco04g0340 1125 MobiDBLite consensus disorder prediction 1021 1045 - -
Acco04g0340 1125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Acco04g0340 1125 Gene3D - 648 947 IPR027417 -
Acco04g0340 1125 MobiDBLite consensus disorder prediction 1098 1125 - -
Acco04g0340 1125 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Acco04g0340 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 642 IPR027417 -
Acco04g0340 1125 MobiDBLite consensus disorder prediction 53 90 - -
Acco04g0340 1125 PANTHER SNF2/RAD54 HELICASE FAMILY 157 1020 - -
Acco04g0340 1125 SMART SnAC_2 933 995 IPR029295 GO:0042393
Acco04g0340 1125 Gene3D - 385 641 IPR038718 -
Acco04g0340 1125 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Acco04g0340 1125 MobiDBLite consensus disorder prediction 370 386 - -
Acco04g0340 1125 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Acco04g0340 1125 MobiDBLite consensus disorder prediction 334 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0340 Acco-ChrAcco04 2663945 2673178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0340 723 868 RAD5 or RAD16-like Gene Family AT5G43530 38.000 1.27e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco04g0340 SNF2_N 3e-67 CL0023