LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0336	ATGCAAGAGTTTCTGGGTTCTGTTCGCCGATCCTTGGTTTTCAGGAGCCCAGGCGGGGACGATGGAGGGTTTGGTGTTGGCGGTCTGGTCGATAAGATTGGCTCTAGTATTCGCAAATCACGAATTGGGCTCTTCTCTCAGCCACACGTTAGGGCTCTGCCGCCGGTTCCCAAGGACAACACTCCCTCGATCCGATGGCGGAAGGGCGATTGGATTGGTTCTGGTGCCTTTGGTACAGTCTACATGGGTATGAACCTTGATTCCGGGGAGCTTATTGCTGTCAAGCAGGTTTTAATCGCGGCAAGAAGTGCTTCGAAAGAGAAAACGCAGGTTCATATCATGGAACTTGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAACATCCAAATATTGTTAGATACTTGGGAACTGCTAGGGAGGAGGATTCCTTGAATATCCTGCTGGAATTTGTACCTGGAGGATCTATCTCATCACTCTTGGGGAAATTTGGATCCTTCCCTGAGTCTGTAATAAAAAAGTTTACAAAACAACTCTTACTGGGTCTTGAGTACCTTCACAAGAATGGAATTATTCACAGAGATATTAAGGGTGCAAACATTCTTGTTGACAATAAAGGATGCATTAAACTCGCAGACTTTGGTGCATCTAAGAAAGTTGTTGAGCTGGCTACCATGAACGGTGCAAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTGCAGACAGGGCATAGCTTCTCTGCTGATATTTGGAGTGTGGGATGCACCGTGATAGAGATGGCAACAGGGAAGCCTCCATGGAGTGAACAGTTTCAGGAGGTTGCTGCTCTTTTCCATATCGGGACCACTAAATCCCATCCATCCATACCTGACCATCTTTCTGCCGAGGCAAAGGATTTTTTGTTAAAATGCTTGCAAAAGGAACCGGATCTAAGGCCTTCTGCATCAGATTTGTTACAGCATCCATTTGTCACCTGCGAGTATCAAGAATCTAATCCCACATTACGCAGTTCAGTTGTGGAATCTAGCAAGAAGATGGTGACATCTGGGACAGATTCTAAAATCTCGGGAATAGGTCTCAAGGATGTTTGTCAAATGGATAGCATAAGATGCTCATCTGTGTCTCCTGAGACTCTTTTAAAATCAGATTTCAATCGAGAAACAAGCAATTATGATGATGATATGTGTCAAATAGATGACAAAGATGATCTTTTTGTTGATGCATCAGCAAAATCTAAATCTCCCATTTCAGATGATATAAAGAGTTTTAACCCTATGTGTGAGCCTATGGATGAATGGCCATGCAATTTCGATAAAAGTCCAGATTTGGAGAGAAAGGGAACAAACTTGTCTCCTGATCAGACAATGAGAAGCACTGTAGCATCTCAAAAAGTGGAGAATGAATTTTCATTTCCAAGTGAGCCTATAGGAGCTGATGACGATGAAGAAGTTACTGAGTCAAAAATTAGAGATTTTCTAGATGAAAAGGCTCTGGAACTGAAGAAACTCCAAACTCCTCTTTATGAAGAATTCTTTAGCATATCGAACGCAGCTGTTCCTCCCATACCTGTTTCAATTGCGCACAGTGAAGTTGTTTCAGAAGTGTCAAATGTAACACCAAAAAGCAGGTCACCAAGTCAGGCTAGCAGACGATACTCAATGGCTGAGGGTGCTAATATTGCAAGGCATGGAAGTCATTATAAAAATCAATCTAAATTTAGTTGTGCAAATAGTCGGCCTTTGCAGGAAATCCACCCATCTGAGCTTAACGAATGGAAAGAGACACTTCAATATGCTAAGTTGGAATCATTTAGTGCTAGTCCAACTTTCTCAGAGATACAAAGGAAATGGAAGGAAGAACTTGTGGAAGAGCTTGAGAGGAAGAGAGAGATGATGCGTCTGTCAGGCTTAGGAGGGAAGATCACATCCCCAACTGATCGCAATCTTCGTAGACTGGCAGAGAGATCACGCTTTGCATTTCCAAGCTAG	2001	0.4288	MQEFLGSVRRSLVFRSPGGDDGGFGVGGLVDKIGSSIRKSRIGLFSQPHVRALPPVPKDNTPSIRWRKGDWIGSGAFGTVYMGMNLDSGELIAVKQVLIAARSASKEKTQVHIMELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKKFTKQLLLGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATMNGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSEQFQEVAALFHIGTTKSHPSIPDHLSAEAKDFLLKCLQKEPDLRPSASDLLQHPFVTCEYQESNPTLRSSVVESSKKMVTSGTDSKISGIGLKDVCQMDSIRCSSVSPETLLKSDFNRETSNYDDDMCQIDDKDDLFVDASAKSKSPISDDIKSFNPMCEPMDEWPCNFDKSPDLERKGTNLSPDQTMRSTVASQKVENEFSFPSEPIGADDDEEVTESKIRDFLDEKALELKKLQTPLYEEFFSISNAAVPPIPVSIAHSEVVSEVSNVTPKSRSPSQASRRYSMAEGANIARHGSHYKNQSKFSCANSRPLQEIHPSELNEWKETLQYAKLESFSASPTFSEIQRKWKEELVEELERKREMMRLSGLGGKITSPTDRNLRRLAERSRFAFPS	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0336	666	FunFam	Serine/threonine-protein kinase STE11	62	156	-	-
	Acco04g0336	666	SUPERFAMILY	Protein kinase-like (PK-like)	65	329	IPR011009	-
	Acco04g0336	666	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	61	347	-	-
	Acco04g0336	666	Coils	Coil	106	126	-	-
	Acco04g0336	666	SMART	serkin_6	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g0336	666	ProSiteProfiles	Protein kinase domain profile.	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g0336	666	CDD	STKc_MAPKKK	65	328	-	-
	Acco04g0336	666	ProSitePatterns	Protein kinases ATP-binding region signature.	72	95	IPR017441	GO:0005524
	Acco04g0336	666	Pfam	Protein kinase domain	68	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g0336	666	Gene3D	Transferase(Phosphotransferase) domain 1	65	360	-	-
	Acco04g0336	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Acco04g0336	666	FunFam	Mitogen-activated protein kinase kinase kinase 2	65	356	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0336	Acco-ChrAcco04	2613692	2618968	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0336	1	644	MAP Kinase Kinase Kinase	AT3G06030	58.548	0.0	674

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Acco04g0336		Pkinase	1.5e-72	CL0016