Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0333 ATGGATGCCCTCTTCAATGCACGGCTTCTTCCCATTTCCTTTGAGAAGCCTACTCCTACTTGTTTTCTTTCTCACTCACAAAATCGTACCTTCAATTTTTTCTTTTCCATGTACCACACCAATCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCACGGAGCAGTTGATAAAGTTGGTTCTCCTACGTTAAGGGAAATATGTGAAGAAAGTGTTCCCCGGCATATATTAGACAGGATGGAAGAAATTGGATATGTTATGCCTACAGATGTCCAGAGGCAGGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTTGCATACCTGCTTCTGATATATTCCGTCATAAACACTACAAAAACTGCTGTGCAAGCTCTTGTTGTGGTGCCCACTCGTGAACTTGGCATGCAAGTTGCAAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGGGGTTGAGGAGGAGTGTGAGTCATGTACTGTCATGGCTCTTTTGGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATTATAGTGGTAGCAACGGTGGGGAGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAATCTGTGCGGGTGTTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAGCTTTTAAATTTGTATTCGTTGTGCAATAACCGGCAGACAGTTTTTGCCAGTGCATCTATACCTCAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGACGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCACCACGCCTGCATCATAGTTTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATGTTTGATACAATCGGATGCACCTGAGTCAGGCATTATATTTGTCAGTGAGCAGTCTGAGAGGTCAAAACGGGCAGGATATGGTCCATCGACATCCCTTCTGATTGACTTTCTGAAGACTTCATATCATGGTCCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCCATTCACGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAGTGTACTGTTACCACTCTCATTGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCGGTTGTGAAGAACTTACTTTATAA 1428 0.4321 MDALFNARLLPISFEKPTPTCFLSHSQNRTFNFFFSMYHTNPGLRFISKFRTPQSLLNTSSLAHGAVDKVGSPTLREICEESVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYLLLIYSVINTTKTAVQALVVVPTRELGMQVAKVARMLAASPTGVEEECESCTVMALLDGGTLRRHKSWLKAEPPIIVVATVGSLCHIIERQFLKLESVRVLVVDEVDFIFNSSKQVSSLRKLLNLYSLCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPPRLHHSFVVCHRNKKQQTLLCLIQSDAPESGIIFVSEQSERSKRAGYGPSTSLLIDFLKTSYHGPLDILLLEEDMNFHSRAVSLLEVRKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTLIVPEERFVLQKYENELMFGCEELTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0333 475 Gene3D - 303 472 IPR027417 -
Acco04g0333 475 Gene3D - 67 287 IPR027417 -
Acco04g0333 475 CDD DEADc 87 282 - -
Acco04g0333 475 Pfam Helicase conserved C-terminal domain 319 437 IPR001650 -
Acco04g0333 475 CDD SF2_C_DEAD 306 451 - -
Acco04g0333 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Acco04g0333 475 SMART ultradead3 95 309 IPR014001 -
Acco04g0333 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Acco04g0333 475 SMART helicmild6 355 439 IPR001650 -
Acco04g0333 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 451 IPR027417 -
Acco04g0333 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Acco04g0333 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 77 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0333 Acco-ChrAcco04 2587616 2590784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0333 95 464 Eukaryotic Initiation Factors Gene Family AT1G72730 25.594 8.45e-29 115