Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco04g0332 | ATGGAACGTCTCCTGACCGCTTCCCTTTGTTATCGTCTTTGCGCCATTCTTTACTTTGACCCATTACTTTCTCTCTACTATTTTTTAGGGCTCTTTCCTTCTTGCCCTCCTGCCTCCTATTCTCCTTCATCTCAAGTCTCCTTCCTTCCTTCTTTGGGTTTGCTCTCCATGGATAGTTTCACCTCTTCATCATCTGTTCCTCCTTCTCCTCCACCTCTGTTCGACATTCTTCCCACATCGGCTTCATCCTCTTCTGCTGCTTTCGACGACGGTTCCGAGGACTCCTGCAGTATTTGTTTAGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAATTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGTCCAATCTGTTGGCAGATGCTCGTTTTGAAAGACCCAGCCAACCAAGAACTTCTAGCAGCAGTGGAAGCTGAAAAACGTGCAAGGTCAAGAAGCTCATACTCCTCTGCATTCCCATATCCTCGTATCCCCATTGAACGGCATAGTGCAGAACACGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCACATTATTTTCGTAGACGGGAAATGCAAAGATCATCTGGAGTGGGTCCATCTCAGATTCCTGTACCTGACTCTTCATTGCATGTCTCCGGGCTGCAACCAGTGCGTGCAACTTCACCTTATGGAGGTGGTTCACCTAATTCTGGTCCTGCTTCAGACGTTCAACCCCCACCATCTGCCTCTTCCACTGTTGAAGCAATTACAAGAAATGCCACTCCTGAAACTGATGACCCTTTCAAAGCCAGGGTTCTTCATAGCCAGCCACCTTCTGAGAGTGTGAGAAGACTGAACACTTCTGAGATGTTTACCTTCCCTGAGTCCATCAAGACCAAATTTTCTGCTGCTTCAGCTAGATATAAAGAAACTATTTCAAAAAGTACACGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGCTTCAGTAAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCTGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTCCCCTCAAAACGGGCTACTGCTTCTCCTCCCATGCCTAGCTCTACCGTGGGAACTTCTGGCTTCCCCTTTAAAGGAAAGACTGTCCAAGAAAGTGGTGGTGGACAGTCTCTTCTCTCTACTGTTAAGGAAGAGAGTGGAGTTGTCATTCATGACGTTAGACCAATTCCACCTGCACCAGTTTCCAGCGCGGCTGTTAGTCCATTGGAATATCCTCAACCACATGTTGAGAGTGGACAGGATGAGGTCAAGACTTAG | 1383 | 0.4635 | MERLLTASLCYRLCAILYFDPLLSLYYFLGLFPSCPPASYSPSSQVSFLPSLGLLSMDSFTSSSSVPPSPPPLFDILPTSASSSSAAFDDGSEDSCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQMLVLKDPANQELLAAVEAEKRARSRSSYSSAFPYPRIPIERHSAEHDDSCSDDSDFDEQIMQHLVAAASRAHYFRRREMQRSSGVGPSQIPVPDSSLHVSGLQPVRATSPYGGGSPNSGPASDVQPPPSASSTVEAITRNATPETDDPFKARVLHSQPPSESVRRLNTSEMFTFPESIKTKFSAASARYKETISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLPSKRATASPPMPSSTVGTSGFPFKGKTVQESGGGQSLLSTVKEESGVVIHDVRPIPPAPVSSAAVSPLEYPQPHVESGQDEVKT | 460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 379 | 398 | - | - | |
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 248 | 278 | - | - | |
| Acco04g0332 | 460 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 136 | IPR001841 | - | |
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 217 | 302 | - | - | |
| Acco04g0332 | 460 | SMART | ring_2 | 96 | 136 | IPR001841 | - | |
| Acco04g0332 | 460 | FunFam | E3 ubiquitin-protein ligase RHF1A | 81 | 148 | - | - | |
| Acco04g0332 | 460 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 152 | IPR013083 | - | |
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 220 | 234 | - | - | |
| Acco04g0332 | 460 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 59 | 145 | - | - | |
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 383 | 398 | - | - | |
| Acco04g0332 | 460 | MobiDBLite | consensus disorder prediction | 428 | 460 | - | - | |
| Acco04g0332 | 460 | SUPERFAMILY | RING/U-box | 89 | 143 | - | - | |
| Acco04g0332 | 460 | Pfam | Ring finger domain | 94 | 136 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco04g0332 | Acco-ChrAcco04 | 2580899 | 2585331 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco04g0332 | 90 | 147 | C3H Transcription Factor Family | AT4G00335 | 46.552 | 8.85e-14 | 68.2 |