Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0260 ATGAGGAATGTCTTTTGTTGTGCGGCCATTGCTTTTCTAGTTCTCGGTGAAGATGCACTGTATATTCTGTATTCTGTACTCCAGAAAGTGGTTTTTGGCGATGGACCGCTAATGCATGCTAATCCTCTCTGTTTAGCTTTCCTATGCTTCGCCATGGACAATCATCGCCGTTCCCCAAGCGCTGAATCTGCTGAATTAGGAAAGGGGGACTCAAAAGAGAAGAAGACTTCTTCAAAAGGCAGAAGGGCTCGGTCTGTTCTTTATGGTTCCTGGAGAGGATTGGACTTGGAGTCTTTATGCCCCAAAGAAAAAGGCACATCCGAGTGGCCTGCTAGTGAATACATGCCTGAGGACTTCTGTAGAACTTTAAATTTTCAAGCTTCTTCTTCCAATGCCAGCACTTCTGACACAGAATGCCCGCTAGATACTACAAATAATACTCAGTGGCGCATTATTCGTTTCATGAAAAAAGGATCTTACATGCGCTTCAATCATCCGCCTAAAAATATTCCCAAACTCACCCGAAAAACAGTTAAACGGATCAAAGAAGACATCATCCCTGGTCTACATTCTTCAGATTCAACCCCATCACTTCATCCAGATTCAACCCCATCTTTAAATCCAAAAGATCGAAATAATTTTCCCTTCAAGTCTTCATGGAAACATTATTCTTTTGCACAGCTCCAAGCTGCCACCAACAACTTCAGTGATGATATGTTGATTGGGAAGGGAGGTTATGCTGAGGTTTACAAAGGAAAAATGGAAGATGGGACATATGTTGCCATCAAAAAGCTGACAAGAGGAACCCAAGAAGAAATGACATCTGATTTCTTGTCTGAACTTGGTATTATTGTACATGTTGATCATCCCAATATTGCCAAATTGATTGGTTATGGTGTGGAAGGGGGCATGTTTCTTGTTCTTCAGTTATCTCCACACGGCAGCCTTGCAGGCGTACTTTATGGGCCTCGAGAGAGACTGGACTGGAACATCAGATTTAAGATTGCTCTAGGGACTGCTGTGGGCCTTCAATATCTGCACGAGGGATGTCAAAAAAGGATCATCCACAGAGATATCAAGGCTGCCAATATTCTTCTGTCTGAGGATTTTGAGCCTCAGGTATCTGATTTTGGGCTTGCAAGGTGGTTACCTGGTCAGTTGTCTCACCATACTGTGGACAAAATTGAAGGCACATTTGGTTACCTTCCTCCCGAATTCTTCATGCATGGTATAGTAGATGAAAAGACCGATGTCTTTGCTTATGGAGTGCTGTTATTGGAGCTTATTACAGGAAGACAAGCTTTGGATAGCTGTCAGAAAAGTTTGGTGATGTGGGCAAAACCTTTGCTGTCTGTAGATAAAATCAAAGAGCTGGTAGACCCTTATCTGAGTGATGCATACGATGAAGAACAGATGAAAGTTGTTATGATGACGGCTTCCTTGTGTATAGAGCAGTCTTCATGTGAGAGACCATATATGAGCGAGGTTGTGAAGACTCTTAAAGGAGAAGAAGGTGGATTGGAGTTCATAATGGAGCGCCAGAAGTCAAAACTGAGAAGGACATATTCTGAGGAGCTGCTAGATGCAGAGGATTACAATTCAACCAAGTACTTGAGTTTGAATGACTCGAGTCGAGAGCCGAGTCCTGAGAGACCTGATTCTTTGAAGGAAGAAACCACACACAAGTAG 1689 0.4292 MRNVFCCAAIAFLVLGEDALYILYSVLQKVVFGDGPLMHANPLCLAFLCFAMDNHRRSPSAESAELGKGDSKEKKTSSKGRRARSVLYGSWRGLDLESLCPKEKGTSEWPASEYMPEDFCRTLNFQASSSNASTSDTECPLDTTNNTQWRIIRFMKKGSYMRFNHPPKNIPKLTRKTVKRIKEDIIPGLHSSDSTPSLHPDSTPSLNPKDRNNFPFKSSWKHYSFAQLQAATNNFSDDMLIGKGGYAEVYKGKMEDGTYVAIKKLTRGTQEEMTSDFLSELGIIVHVDHPNIAKLIGYGVEGGMFLVLQLSPHGSLAGVLYGPRERLDWNIRFKIALGTAVGLQYLHEGCQKRIIHRDIKAANILLSEDFEPQVSDFGLARWLPGQLSHHTVDKIEGTFGYLPPEFFMHGIVDEKTDVFAYGVLLLELITGRQALDSCQKSLVMWAKPLLSVDKIKELVDPYLSDAYDEEQMKVVMMTASLCIEQSSCERPYMSEVVKTLKGEEGGLEFIMERQKSKLRRTYSEELLDAEDYNSTKYLSLNDSSREPSPERPDSLKEETTHK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0260 562 Gene3D Transferase(Phosphotransferase) domain 1 312 520 - -
Acco04g0260 562 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 312 514 - -
Acco04g0260 562 MobiDBLite consensus disorder prediction 546 562 - -
Acco04g0260 562 SUPERFAMILY Protein kinase-like (PK-like) 212 500 IPR011009 -
Acco04g0260 562 ProSiteProfiles Protein kinase domain profile. 235 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g0260 562 MobiDBLite consensus disorder prediction 190 210 - -
Acco04g0260 562 ProSitePatterns Protein kinases ATP-binding region signature. 241 264 IPR017441 GO:0005524
Acco04g0260 562 Pfam Protein tyrosine and serine/threonine kinase 240 500 IPR001245 GO:0004672|GO:0006468
Acco04g0260 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Acco04g0260 562 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 212 310 - -
Acco04g0260 562 PANTHER OS08G0249100 PROTEIN 86 534 IPR046958 -
Acco04g0260 562 SMART serkin_6 235 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g0260 562 MobiDBLite consensus disorder prediction 60 82 - -
Acco04g0260 562 MobiDBLite consensus disorder prediction 60 77 - -
Acco04g0260 562 MobiDBLite consensus disorder prediction 187 210 - -
Acco04g0260 562 Gene3D Phosphorylase Kinase; domain 1 207 309 - -
Acco04g0260 562 MobiDBLite consensus disorder prediction 537 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0260 Acco-ChrAcco04 2077029 2080780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0260 223 504 Receptor kinase-like Gene Family AT1G53420 43.448 9.19e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Acco04g0260 PK_Tyr_Ser-Thr 1.7e-40 CL0016