Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0255 ATGGAAACCCAAGCTCATTATACTCCGACACCAGCCCTGTCACCATCATTGACGCCGCCACCGCAGTCACCGCCGCCAGCGGGCCTCGATCAGCCACCGGGGGTTTCTGAAATGGAGGTGCAACACGGTCTTTCGGAAGACGCTTCATCTGTTTGGGACCTGGATTGCCTATTGGATTTCAGCCTGGACGAGAATTTAGCTCTATCGTTAGACGATTATCATCCTAATTCAGAGGCTCCTCAAAGTCCGGTGCTTCCTTCTCAAGAGACTCCGAATTCTGAGAAGGTTCGCAAGCGAGACCCCAGGTTGACTTGTTCCAATTACCTGGCTGGTCGGGTCCCATGTGCTTGCCCGGAGCTCGATGCTAAGCTCGAGGAAGAAGGTCTTCGTGGCAAGAAGCGCGCTCGCACCGTGCGGGCATCATCTGGGATTGCACGGTGCCAGGTGCCTGGGTGTGAAGCAGATATTAGTGAGCTCAAAGGCTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCTAATGCTAGTACGGTTATGCTTGACGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGACGAAGGTAAACGAAGCTGCAGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAGCCTACAGAAACCAGAGCTACAGAAGATCATGAAGTTCAACCTGTCAAACAGACTGAAGATGATGTGGGAAAAGATAGTTCACATATAAGCAGTGAGATAAACGACCTAGAAATTTCCCTGGAGCTCGAAGATGGACAACTTACTGCCCCATGTTTGGCTCCTGATACCTTGAACATTAAAAATGATAGTTTTGTGTCCTCTGTTGCTTGCGGTGAAACACAAGTGAATGGTGGAAAAGAGAATTCTGACATTTCTTATTCACCTTCATACTGTGAAAAGAGTGCTTACTCGTCAATGTGCCCAACAGGTCGAGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTCCCTAGAAGGCTACGGCATCAAATATTCCAATGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGCCCTGGGTGTACAATCCTGACAGTTTTTGTAACTATGCCTAAATTTATGTGGACAAGTTTACTTGAAGAGCCTCTGTATTACCTGCAAGACATAGTCGCTCCAGGAAAGATGCTATATGGAAGAGGCACCATCTTTGCTTATCTAAATGACATGGTCTTCTGCATTTTGAAAGGTGAAACTTCTGTGATGGAAGTTCAGATAAAGGTGAATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAAGCTGGAAAACCTATGGAATTTGTTGCTTGTGCAAGTAACTTGCTGCAGCCTAAGTTTCAGCTTCTCATATCTTTTTCAGGAAAGTATTTAAAGTATAAAAAGTGTGTTGTATCTCCTCATAACTGGGCAGGGGATGGCATTTCTTGTGCTTTTGACGGTCAGTTGTATAAGATTTGTGTCCCTCATACGGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAAAATGAGTCTGGTTTATCGAACTTCATTCCTGTACTCATTGGGGACGCCGAAATCTGCTCCGAATTGGAGACAATGCAGCAAAAACTAGACAAATCTCTTCTTTCAAAACAAATGCAGGCTGCATCTGGCAGTTCTATTTGCAGCTTATGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGTTGCTTAAAGATCCCACTTCAGAAGATTTTCATAGAGCCATGACAACTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGAATTAATTGTCATTTTGGGGAAAATATTGCGGAATTTGGATATTTTGACAGAAAGCGTGGAAACAAACAATGTGATTAACAGAATGAGTGAAGCTGACATGACATTACTACTGAAACACACATGTCAAGCTAGAGAACTCCTTTGGCAGAAACATCAGAAGGGTGAAGATTTAGTCTTGCACTCTGTTTTTTCTGAAATGGAAGGGCATAAAGTTGCTCTAAGCTGCTATCAAGATAAGATACAATCAGTTGTCACTATCGGCAATCAGGGTGCCGAGTCAAGGGAAGATGCTAAATTAGGAGCGAGAAGTCCAACTTGGGTTGACAAAAGTGAAAGGATACCTCTTTTGGGGAATGGTATTACAATGAACATGGAAGAGTCACCTCGTCTATATCGATATTTTGCGAGGCGGCCGACCATTCTCATGATTGCTGCAGTCGCTGTGTGTTTTGGGGTTTGCGCAGCCTTCCTTCATCCTGGGAGGGTTGGTGAGTTTGCAGTATCCATTCGAAGGTGCTTGTTCAACAAGTCATAG 2403 0.4432 METQAHYTPTPALSPSLTPPPQSPPPAGLDQPPGVSEMEVQHGLSEDASSVWDLDCLLDFSLDENLALSLDDYHPNSEAPQSPVLPSQETPNSEKVRKRDPRLTCSNYLAGRVPCACPELDAKLEEEGLRGKKRARTVRASSGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTETRATEDHEVQPVKQTEDDVGKDSSHISSEINDLEISLELEDGQLTAPCLAPDTLNIKNDSFVSSVACGETQVNGGKENSDISYSPSYCEKSAYSSMCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEEPLYYLQDIVAPGKMLYGRGTIFAYLNDMVFCILKGETSVMEVQIKVNAPRLHYVHPTYFEAGKPMEFVACASNLLQPKFQLLISFSGKYLKYKKCVVSPHNWAGDGISCAFDGQLYKICVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAEICSELETMQQKLDKSLLSKQMQAASGSSICSLCEAFALRHTAYSDLLLDIAWLLKDPTSEDFHRAMTTSQIQRFCYLIDFLMCNELIVILGKILRNLDILTESVETNNVINRMSEADMTLLLKHTCQARELLWQKHQKGEDLVLHSVFSEMEGHKVALSCYQDKIQSVVTIGNQGAESREDAKLGARSPTWVDKSERIPLLGNGITMNMEESPRLYRYFARRPTILMIAAVAVCFGVCAAFLHPGRVGEFAVSIRRCLFNKS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0255 800 MobiDBLite consensus disorder prediction 212 249 - -
Acco04g0255 800 Pfam SBP domain 147 221 IPR004333 GO:0003677
Acco04g0255 800 Gene3D - 143 208 IPR036893 GO:0003677|GO:0005634
Acco04g0255 800 MobiDBLite consensus disorder prediction 1 43 - -
Acco04g0255 800 MobiDBLite consensus disorder prediction 72 99 - -
Acco04g0255 800 SUPERFAMILY SBT domain 145 225 IPR036893 GO:0003677|GO:0005634
Acco04g0255 800 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Acco04g0255 800 MobiDBLite consensus disorder prediction 222 249 - -
Acco04g0255 800 MobiDBLite consensus disorder prediction 13 31 - -
Acco04g0255 800 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 71 621 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0255 Acco-ChrAcco04 2042629 2048718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0255 31 793 SBP-box Gene Family AT5G18830 45.797 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco04g0255 SBP 5.3e-28 No_clan