Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0254 ATGGCGAGATACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGAAGCAGAACCCCACCGCGTGGACGCAAACGTTACGATGATGAACCTCGTGATCGCTACCGTGAAAGCAGGTCCTACAGAGACCGCCGCTCTCCTGCTCCTTCAGGCTTACTTGTCCGTAATCTTCCGCTCGATGCTAAGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGATGTATATCTTCCCAAGAATTACTACACTGGTGAGCCCCGGGGCTTTGGCTTTGTAAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGCGGACGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTCTGAATACTCGTGTAAGTGGTCGGCATGGAGGAAATGGTAGAAGAAGAACTCCCACAAGATCTCCAAGGCGCCGATATCGTTCCTACTCAAGGTCTCTATCACCAGCTGGTGATCACTCAAGATATTAA 540 0.4926 MARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRYRESRSYRDRRSPAPSGLLVRNLPLDAKPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRLNTRVSGRHGGNGRRRTPTRSPRRRYRSYSRSLSPAGDHSRY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0254 179 SMART rrm2_1 51 124 IPR003954 GO:0003676
Acco04g0254 179 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Acco04g0254 179 MobiDBLite consensus disorder prediction 132 179 - -
Acco04g0254 179 MobiDBLite consensus disorder prediction 22 44 - -
Acco04g0254 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Acco04g0254 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Acco04g0254 179 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 166 - -
Acco04g0254 179 MobiDBLite consensus disorder prediction 1 21 - -
Acco04g0254 179 Gene3D - 2 139 IPR012677 -
Acco04g0254 179 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Acco04g0254 179 MobiDBLite consensus disorder prediction 1 55 - -
Acco04g0254 179 MobiDBLite consensus disorder prediction 146 164 - -
Acco04g0254 179 SMART rrm1_1 51 124 IPR000504 GO:0003723
Acco04g0254 179 SUPERFAMILY RNA-binding domain, RBD 47 154 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0254 Acco-ChrAcco04 2029206 2031800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0254 42 137 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 3.70e-08 50.4