Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0234 ATGGAGAAAGATCACGACAACTATCATTCGGCTCCACCCTTCCACCCAAGCTTCAACGCCGTGCCTTTGGACTACTCTCACCACAATCTCATGAAGTTTCGGATCGGAGAAGCCTCCGGCGAAAGCAGCAGTCACATGAATGATAATAGTACAGGCATGCCGGATTATATGCTCAATAACAACAACAACAATCATCAACAACAACAACCAGCTTATGGGTTTTATGGCGGTGCACCAGCTTGTTCATCTTTTGATAAGCTGAGTTTCGCAGATGTGATGCAGTTTGCAGATTTCGGACCCAAGTTGACCTTAAACCAGACGACCAAGATGAATTGTAGTGGAGGAGAAGTAGAAGTAGATCAGTGTGGGATGGAGGACCCAGTTTTGTTCCTCAAGTTCCCTGTGTTAAACGGCAAGTCGTTGGAGGATCATCAGAATCTGATTGGAGAAAACATAGCAAAAGATCAAGAAGGAGAAGTGAGAGAGGAGGATGAACTAGAAGCTCGAATCTCTGATAGTAATAACATGTCGGTGCAGCAACACGGTTTTGTAGAGGAAGACATGGAGAAGAATAATAGTAACCCTACAAGCACAGTACAAGAAAACAACAATACTAATAACAAGAGCAAGAGGAAGAGACCCAGAACCATTAAAACCAGCGAGGAGGTAGAGAGCCAGCGTATGACTCACATCGCCGTCGAAAGAAACCGCCGGAAACAAATGAACGAGCATCTTCGTGTCCTCAGATCCCTCATGCCAGGTTCTTACGTCCAAAGGGGGGATCAAGCTTCTATAATAGGAGGGGCTATAGAGTTTGTGAGGGAATTAGAGCAGCTTCTTCAGTGTTTGGAGTCACAGAAGAGAAGGAGGTTACTAGGAGAAGCACATACAAGGCAAGTTGGGGATTCTTCTTCTTCTCTTGCAATACAGACGCAACAAGTACAACAAGCTCCATTTTTTCCACCTTTGGCTCCTTTGCCAAATGATCATAATCAGATGAAGCAGCTTGTTGATCAGTTTGAGAGTGGTCTCAGGGAAGAAACGGCTGAGAACAAGTCGTGTTTGGCAGATGTGGAAGTGAAGCTTTTAGGGTTTGATGCGATGATCAAGATCCTATCAAGAAGACGACCAGGCCAGTTGATTAAGGCTATTGCTGCACTTGAAGATTTGCAGCTTATTATCCTCCACACCAATATCACCACAGTTGAACAAACCGTTCTTTATTCTTTCAATGTCAAGGTTGCAGGTGATTCAAGGTTCACAGCGGAAGATATAGCCAGTTCTGTCCAACAGATATTCAGTTTCATTCATGAGAACACTGGAATGTAA 1329 0.4424 MEKDHDNYHSAPPFHPSFNAVPLDYSHHNLMKFRIGEASGESSSHMNDNSTGMPDYMLNNNNNNHQQQQPAYGFYGGAPACSSFDKLSFADVMQFADFGPKLTLNQTTKMNCSGGEVEVDQCGMEDPVLFLKFPVLNGKSLEDHQNLIGENIAKDQEGEVREEDELEARISDSNNMSVQQHGFVEEDMEKNNSNPTSTVQENNNTNNKSKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAHTRQVGDSSSSLAIQTQQVQQAPFFPPLAPLPNDHNQMKQLVDQFESGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKAIAALEDLQLIILHTNITTVEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFSFIHENTGM 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0234 442 Gene3D - 223 298 IPR036638 GO:0046983
Acco04g0234 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 303 IPR036638 GO:0046983
Acco04g0234 442 SMART finulus 231 282 IPR011598 GO:0046983
Acco04g0234 442 PANTHER TRANSCRIPTION FACTOR FAMA 117 433 IPR044283 GO:0003700|GO:0010052
Acco04g0234 442 MobiDBLite consensus disorder prediction 189 205 - -
Acco04g0234 442 MobiDBLite consensus disorder prediction 188 228 - -
Acco04g0234 442 CDD bHLH_AtFAMA_like 228 295 - -
Acco04g0234 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 276 IPR011598 GO:0046983
Acco04g0234 442 FunFam Basic helix-loop-helix transcription factor 216 291 - -
Acco04g0234 442 Pfam Helix-loop-helix DNA-binding domain 226 277 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0234 Acco-ChrAcco04 1908124 1910270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0234 24 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.182 5.42e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g0234 HLH 9.7e-10 No_clan