Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0227 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTATTTGGTGAAGAAAAAATTGCATAACACTGCCAAGTCATTCATGACTGAAGGGAAGGTTGCGCCAGATCCAGTGGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTATTTTGGGATATTTTTATTGCAAGGACAAACGAGAAACATTCTGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGAGCAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAGACTCAGTTTCAAAGGAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCCACTGCCAGTGCATTGGCTGCGAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCATTTTGAAGTCAACAACAAGTCATCCTGGTCAGATTGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCGCAGGACATTAAAAGTGAAGTTGTCATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGAGTTGGTAATCTCACACTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCACAAGTTCAAAAACCTCTTCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCCTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTACACAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGAGGTAAAGATGGCCAGCCTATTGCAAATGATGGATCAATTGGTTCTCCAATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCGCCTCTCAGCAACAGCAGGATCCTTTGCACCCACAACAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATTGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCGCAGGTGGTCTTGCATCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAGTGCTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCTTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCAACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTGAATACAGAGAGCACTCCAGAGGACCACACTCTTATTATTACTGATGTTCGTTTCAGACCAAATTCAAGTCAGCTTGCAACTTCTTCTTTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCCAAACTACTTTTGTTTACAGACATACACGGGTCATAACTCTCATGTGATGTCCCTTGATTTCCACCCGAAGAAAAATGATCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTGAGGTTTCAGCCAAGAATAGGACATCGTCTGGCTGCTGCAGCTGGTAACCTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCAGTCATTACAGGGGCACACCACAGATGTGAATTCTGTTTGTTGGGATCACAGTGGAGATTACTTGGCATCTGTGAGTCAAGAGTCTGTCAAAGTGTGGTCATTGGCCTCTGGGGACTGCATTCACGAGCTTAGTTCTAGCGGGAACATGTTCAATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTCATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATAGCAGCTCATGAGTGTATGATATCGTCTTTAGCAGTATCAACAGTGTCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATCTGGAAGTGA 2343 0.4486 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQTQFQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMAILKSTTSHPGQIVQGNTGSVTAALQHMQARNQQTPQDIKSEVVMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGNLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYTDMDPQRLRGLARGKDGQPIANDGSIGSPMQSTSSKINMPQMQQSASQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGAGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRSASEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLNTESTPEDHTLIITDVRFRPNSSQLATSSFDTTVRLWDASDPNYFCLQTYTGHNSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHRLAAAAGNLVSLYDVETDRLVQSLQGHTTDVNSVCWDHSGDYLASVSQESVKVWSLASGDCIHELSSSGNMFNSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIAAHECMISSLAVSTVSGMVASASHDKSVKIWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0227 780 MobiDBLite consensus disorder prediction 326 401 - -
Acco04g0227 780 Pfam LisH 10 36 IPR006594 GO:0005515
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 666 706 IPR001680 GO:0005515
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 572 - -
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Acco04g0227 780 Gene3D - 467 635 IPR015943 GO:0005515
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Acco04g0227 780 SMART Lish 8 40 IPR006594 GO:0005515
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Acco04g0227 780 SUPERFAMILY WD40 repeat-like 492 780 IPR036322 GO:0005515
Acco04g0227 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Acco04g0227 780 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Acco04g0227 780 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Acco04g0227 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 780 IPR044716 GO:0003714
Acco04g0227 780 Pfam WD domain, G-beta repeat 662 697 IPR001680 GO:0005515
Acco04g0227 780 Pfam WD domain, G-beta repeat 747 780 IPR001680 GO:0005515
Acco04g0227 780 Pfam WD domain, G-beta repeat 503 530 IPR001680 GO:0005515
Acco04g0227 780 Pfam WD domain, G-beta repeat 580 617 IPR001680 GO:0005515
Acco04g0227 780 Pfam WD domain, G-beta repeat 541 572 IPR001680 GO:0005515
Acco04g0227 780 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Acco04g0227 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Acco04g0227 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Acco04g0227 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Acco04g0227 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Acco04g0227 780 SMART WD40_4 491 530 IPR001680 GO:0005515
Acco04g0227 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Acco04g0227 780 SMART WD40_4 533 572 IPR001680 GO:0005515
Acco04g0227 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Acco04g0227 780 Gene3D - 636 780 IPR015943 GO:0005515
Acco04g0227 780 MobiDBLite consensus disorder prediction 311 404 - -
Acco04g0227 780 CDD WD40 494 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0227 Acco-ChrAcco04 1856404 1864029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0227 492 740 U-box Gene Family AT2G33340 26.792 2.50e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Acco04g0227 WD40 0.023 CL0186