LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0205	ATGAATAATGTTAGAAGTAATAACAATGTGCAAAAATCCAAAGGCGTAGTGCCTCAGCAAAATGGTCATTGGGGTGCTCAAATATATGCAAATCACCAAAGAATATGGCTTGGAACCTTCAAATCCGAACGTGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTCCGGAGCGGCGAGAGCCACCGGAATTTCCCGTGGAACGATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCAGTACAGCGCGGAAGCAGTCCTAAGTATGATCAGAGATGGAACTTATCCTTCCAAGTTTTCTTCTTTTCTCTTAAGCACCAAAACCCTAACCCTGAATAGCCATGAGCCAATAACAAGCGCCAAAAATAATGGTGAGGAAAAATTCTCCTGCACCCAACTATTCCAGAAGGAACTTACACCAAGTGACGTGGGCAAACTCAATAGGCTCGTCATCCCAAAGAAACATGCAAGTAAATATTTCCCTTACGTATCTGACACTACAGAAGAAGCCGACGGTAATGATAATAATAATAATTACGGGACGACGACGACGGATATGATTAATAATGATGTTGAGCTTATGTTTTACGACAAGCTAATGAGGTCGTGGAAATTTAGGTACTGTTATTGGAGAAGCAGTCAAAGCTTTGTGTTTACGAGGGGTTGGAACAGGTTTGTGAAAGACAAGAGATTGAAGGCTAAGGATGTTGTTGTGTTTTATAAGTGTGAGCCTATAATTGATATGGGCATTAATAATGGTGGTCAAGTGTTTTATTTGCTTGATGTGATCTATAATAATAATAATATAAATGAGAGCTCAAGGACACAGTCTTCTTTTGGGAAAATGTTGAGTTTCGACAATGGAACAGAAGAAGATGATGATGAAACAAAGGAGAAAACACAAAAGGGTACGAAGCTTTTTGGTGTAAGAATTAACTGA	942	0.4055	MNNVRSNNNVQKSKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSQYSAEAVLSMIRDGTYPSKFSSFLLSTKTLTLNSHEPITSAKNNGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASKYFPYVSDTTEEADGNDNNNNYGTTTTDMINNDVELMFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVVVFYKCEPIIDMGINNGGQVFYLLDVIYNNNNINESSRTQSSFGKMLSFDNGTEEDDDETKEKTQKGTKLFGVRIN	313

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0205	313	SUPERFAMILY	DNA-binding domain	13	69	IPR016177	GO:0003677
	Acco04g0205	313	FunFam	AP2 domain-containing protein RAP2.8	11	68	-	-
	Acco04g0205	313	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	11	312	IPR044800	GO:0003700
	Acco04g0205	313	SUPERFAMILY	DNA-binding pseudobarrel domain	133	243	IPR015300	-
	Acco04g0205	313	Pfam	B3 DNA binding domain	135	241	IPR003340	GO:0003677
	Acco04g0205	313	CDD	B3_DNA	134	241	IPR003340	GO:0003677
	Acco04g0205	313	Gene3D	-	123	256	IPR015300	-
	Acco04g0205	313	Gene3D	AP2/ERF domain	12	68	IPR036955	GO:0003700\|GO:0006355
	Acco04g0205	313	Pfam	AP2 domain	14	58	IPR001471	GO:0003700\|GO:0006355
	Acco04g0205	313	ProSiteProfiles	B3 DNA-binding domain profile.	135	264	IPR003340	GO:0003677
	Acco04g0205	313	CDD	AP2	11	69	IPR001471	GO:0003700\|GO:0006355
	Acco04g0205	313	SMART	rav1_2	12	73	IPR001471	GO:0003700\|GO:0006355
	Acco04g0205	313	ProSiteProfiles	AP2/ERF domain profile.	12	67	IPR001471	GO:0003700\|GO:0006355
	Acco04g0205	313	SMART	B3_2	135	255	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0205	Acco-ChrAcco04	1703479	1704420	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0205	8	269	RAV Transcription Factor Family	AT1G51120	55.882	2.74e-101	299

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Acco04g0205		B3	1.1e-24	CL0405