Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0202 ATGGCTTCATCTTTGGAGGAGCTTCTGGCAAAGGAAGGGTTCAAAAAGAGCAGAAGAATGACGAGGTCCATATCTTCCCTACAGTCTGATGCTGTAACTGCACAGCCACCACGTCGCTCTTTCCACAACCGACAAAGGAGACCTTCTATATCTGGTGAGAGAATTTTAACGGAGGGAGCAAAGTCTGATGTCTCACCTGATGGTGCTAAGAACGTGAGGTCAAGGGATAATTTTGATGAAAGAGAAGATGAAGGACTGAAGAATATAAACGATGAGAAACTTTGTAGCAGTACTGAGGTAAGTACAAAAGTTGATCTAAAATTATCAAAAAATATGCCAAGATTTGAGATAACTGAGGTAAGGGAGATAGAAGATAACCTAATTAAAGATGCCTCTTCAAATGAGACATCTGATACCCCGAGAGGGAAAGAGAATAATTCAAGTGAATTGCCTGTCAAGGATGCAAAGGTGGATAAGAGGCATGACAGTGATCTCGACGCAAATATGCCTGGACATTTCAGAGGAAATGCAAAGAAAAGTATGAAAGAACATAGGCATTCCTACAGTAGATCTACAAGCAAAAGCTTTGATAAAAGTTACCAAAAGCATCATGAAAAGGTGACTTCTAATCTAGCTCTTGATGAGGTTGCTGTCCGAGCAATTGTTTCCATTCTAAATGGACATATCAAACGTTTTATGAAAGATGAGGACTTCCGGACTACATTGCGTCACAATTGTTTCTCTTTATTGAGTTTCAATGAGCCAGAAGATGAGAACAGTTTTGAGGCCAAAGTAATAACAAGTCTTGAACAAGGAATTGAGACCGTCGAACGAGCTGTTGAGGAATCTTTACCTTCAGAAGAATTGAAAAGAGCTTCTCAGCAGCTAAGCATTGTTGCAACTTTGAGTTTAAATGATTTGAAACACGGATTTACATGTGGGATACCGAATTATAAGTTGTCAGCTTCTGCTCATCTTTACCTCAGTGCTTTATATAAGATTCAGAGAAAAGATAAGGCGTCAGCAAAGCATCTTTTGCTAGTGTTTTGCGATTCTCCTTTCCTGGCACGGACATTGTTGCTGCCTGAGCTGTGGGAGGATCTATTTTCTCCACATTTTTTCCATTTGAAAGCATGGTACACTGAGGAAGTTGACAGTCTAGCCAATAGACCAAGCAGAGCAAGAAAACAACATCTTCTTGAAAAAGTTTATGAGGAACATTTGGATTCTGGAACTTACATGTTTGCGGTATACTGCAAAAATTGGCTCACTGAAGGAGTTGAACCTCCATCTGTTCCTTCTACCAGTATTCCATCAACCTCTGTCTCGGGAAGTTCGCTGGGTCATTCGTCTGAGCTTTCTAGTCCCATTGATTCATTCTCACCTCAACCAACAGTCAGCAAAAGACTCTATCATTCTGTCTTTGGTAGCTTGAATGAACCGGGAATTGATGACCATGAAGATGATGAGGAGGATAATGACAAAGATACGTGTATCAGAGGTTGTTACGGTTCAGCTGCTATTGAGCAAACATCAAGACGTATATCTGAAGTGGTGAAATTCACTGATCAAGATGTCAAGGAAGACTCCACTAAGAATGAGCCACTTGTTTCGTTGCATCCTGTAAGATTGTTTTTTCCAACCATTCCACAAGAATTTCTTTGCCCTCTTACTGGAAAATTATTGGAGGAACCAGTCACTATAGAGACTGGGCAAACCTTTGAACATGCTGCCCTCAAGTCATGGTTCCAAAAGGGACACAGAACATGTCCTGTATCCGGAGTTACTTTAGACCTTGTAGCTATGCCACTGACTAACATTGTCTTGAAGCGATTGATTCATAATTGGAAGTCAGAACAATTAAGTGAGCTCTTGGCTTCCGCATCCCCAATCTCAAAAAATTCAAGAGAGTCAAAGCTAAAAGATAAGGATGAGATCATTACTTCCAAATTAGAGAGTCTTTACACTTTGTTAAACGAAGAGGACAAAGTAACTTGTACCAAGCATCTCATATCCTTGGGGGTTTTAGAATTTCTGCTTAGGAGATTCGAATTAGGAAATTTGGAAGAGAAAACATGTGTGGCGGCACTCTTGCCAAATTTTATTGGAACAGACTCTCGTTGCATGTATCAGATTGCGAGAGATATTAATAAAAGATTTCTTCTTGATCTTCTTCACCACAAGGAGGTTACTCCAAGAACTAACGCAATATTGTTGCTTACCAAACTGTTAGCATTAAAAAGAATAAAGGATGTTACTTCATTCTTAAATCACTTGAAGGGTGAGGATATATCTACTACAATGCGTGTTTTGCTCATGCACCTCAAGAATTCTCCACCACATCACAAACCTCTGATTGCTGTCCTTTTGTTGCACCTTGATCATCTGGACGAGTCTCAAAATTATGGCTCATACAGAGACCAGGCTGTGAATTCCATTTCAGACGCTCTTCATGCCAGCTTAAATGAAGAGAAGGTCCGAGAAAATTGTTGTAGAGCATTTTTTATATTGGCTGGGCATTTTTCTTCCACTGGGAAGATACAGACCAAGAGGAGCATTCTAAAAGAAGTGGGTTATATGATCAACAGTTCAGAAGTTGATGATAGTTCTGATCATGAGGAAGAGGATTTATTATGGGATGGAGCAATTTCATTTGAAAAGGAAGAAGAACGGAGCAAAGAGTGGTTGGTGAACTTGTTAGAATCAATGATTGCTGATGGAGAGGGTCCATTTGTGAAGTCTGTCTCTAAATGTTTGGACTCTAGACACCCAGATTTGGTCAGCATATGTTTGATAACTGTTGCTTGGTTGAGCTCCTCGCTTTCTATGCTACATAATGCTGGATTACACCTTATTACATTCTTAGCCGTCATTTATGAGATAAAACAAGTCCTGGAAAATGAGGAACTTGAACTCAAGATTCTTGCTTCTATGTGCTTGTTTAATTTCAGCAAGATATCAGAATGCAGAGCACTTTTGACGGCTATGGCAGAAGATATTGATGGTCCTCTTCATGAACTACTTGATGTGACATGGACTGCAAAACAGCTACATGCGATTATTTCTGTCGTAGATTTGTAA 3081 0.3986 MASSLEELLAKEGFKKSRRMTRSISSLQSDAVTAQPPRRSFHNRQRRPSISGERILTEGAKSDVSPDGAKNVRSRDNFDEREDEGLKNINDEKLCSSTEVSTKVDLKLSKNMPRFEITEVREIEDNLIKDASSNETSDTPRGKENNSSELPVKDAKVDKRHDSDLDANMPGHFRGNAKKSMKEHRHSYSRSTSKSFDKSYQKHHEKVTSNLALDEVAVRAIVSILNGHIKRFMKDEDFRTTLRHNCFSLLSFNEPEDENSFEAKVITSLEQGIETVERAVEESLPSEELKRASQQLSIVATLSLNDLKHGFTCGIPNYKLSASAHLYLSALYKIQRKDKASAKHLLLVFCDSPFLARTLLLPELWEDLFSPHFFHLKAWYTEEVDSLANRPSRARKQHLLEKVYEEHLDSGTYMFAVYCKNWLTEGVEPPSVPSTSIPSTSVSGSSLGHSSELSSPIDSFSPQPTVSKRLYHSVFGSLNEPGIDDHEDDEEDNDKDTCIRGCYGSAAIEQTSRRISEVVKFTDQDVKEDSTKNEPLVSLHPVRLFFPTIPQEFLCPLTGKLLEEPVTIETGQTFEHAALKSWFQKGHRTCPVSGVTLDLVAMPLTNIVLKRLIHNWKSEQLSELLASASPISKNSRESKLKDKDEIITSKLESLYTLLNEEDKVTCTKHLISLGVLEFLLRRFELGNLEEKTCVAALLPNFIGTDSRCMYQIARDINKRFLLDLLHHKEVTPRTNAILLLTKLLALKRIKDVTSFLNHLKGEDISTTMRVLLMHLKNSPPHHKPLIAVLLLHLDHLDESQNYGSYRDQAVNSISDALHASLNEEKVRENCCRAFFILAGHFSSTGKIQTKRSILKEVGYMINSSEVDDSSDHEEEDLLWDGAISFEKEEERSKEWLVNLLESMIADGEGPFVKSVSKCLDSRHPDLVSICLITVAWLSSSLSMLHNAGLHLITFLAVIYEIKQVLENEELELKILASMCLFNFSKISECRALLTAMAEDIDGPLHELLDVTWTAKQLHAIISVVDL 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0202 1026 SMART Ubox_2 552 616 IPR003613 GO:0004842|GO:0016567
Acco04g0202 1026 SUPERFAMILY RING/U-box 541 619 - -
Acco04g0202 1026 Pfam U-box domain 549 620 IPR003613 GO:0004842|GO:0016567
Acco04g0202 1026 CDD RING-Ubox_PUB 550 597 IPR045210 -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 428 464 - -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 1 90 - -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 132 146 - -
Acco04g0202 1026 PANTHER OS04G0584500 PROTEIN 545 1022 - -
Acco04g0202 1026 Gene3D - 636 1023 IPR011989 -
Acco04g0202 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 622 IPR013083 -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 68 90 - -
Acco04g0202 1026 SUPERFAMILY ARM repeat 633 987 IPR016024 -
Acco04g0202 1026 ProSiteProfiles U-box domain profile. 548 623 IPR003613 GO:0004842|GO:0016567
Acco04g0202 1026 MobiDBLite consensus disorder prediction 20 39 - -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 128 199 - -
Acco04g0202 1026 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0202 Acco-ChrAcco04 1669695 1674069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0202 445 695 U-box Gene Family AT3G54850 28.788 5.94e-15 77.4