Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0188 ATGGCATTATCATCGAGTGGCCACAAGACCGCATTCCCTGTTACAGGGGCAGCTTCGAACTATCATCTGTATCCTTCTGCTCTTGAAAAATTTGATGATGTCGCGGCTGATCCCAAGCTCTTTATGCAAACCTTGGAGAAGCTCCACCATTCTATGGGTTCCAAGTTCATGATTCCCATTATAGGGGGGAAAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGGTTTCAACTTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTTCATTGCTTTACCACTATGAACAAATATACTATTTTAAGGCCCCAGGATGGAACCGTGAACCTTCTGATGTTGTGCAGAGTCCGTCGCCAGTGCCAATTCCCACTCCAAATGTGCAGCAAATTTTGCATCCCCAAGTTAATGCCTCTCAATTGCCTGAAGCAACTTCAATTTCTTCTGCAGGAACTGCAGTGATTGGGGTGATTGATGGGAAGTTCGAAAGTGGGTATCTTGTTACTGTCACAGTTGGTTCAGAGAAACTTAAAGGCGTTCTATATCAAGCTCCACAAAACCCTGCATTGCCAACAATGCCGCAACATGGTAGTGTTCCAGTCTATAATAGTAATACCTCATCTACTGCTTTGGGTGTCCATCGTCACCGACGCAAGAAATGTGAGATAAAAAAGAGAGACCCTGGTCATCCCAAACCTAATCGAAGCGGATACAATTTCTTCTTTGCAGAGCAACATGCAAGATTGAAACCACTTCATCATGGGAAAGACAGAGAAATCAGTAAGATAATTGGTGAACTCTGGAACAAATTAGTGGAGCCGGAGAAAGCAGTTTATCAAGAGAAGGCACTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAAGGTATAGGTGATGCTGCGCCGTTGCAAGAACAAATTCCCGATAAGGATATGATGGACGCCGACTTGAAAATGGATGAAACCGAGGGAGCAGAATCTCTTCAAACACCTGATAAGAGCTGTTCTGGTGAAAGTGACTCTGAAGATGATAAAGGTACAGAGCATAATATGGACGTGGACGCATCTGCCGGAATGATAGGAGTGGGTGCTAACCATCTGGGTGCAGAGAATCTATCAAAGGAGAAAGAAGGGAATGATGATGGAGATCAACATGCTCAAAAGATGGATGAGAGCTCAAGCATGATGGTTGTGTAG 1302 0.4363 MALSSSGHKTAFPVTGAASNYHLYPSALEKFDDVAADPKLFMQTLEKLHHSMGSKFMIPIIGGKELDLHRLFLEVTSRGGIEKIIRERRWKEITAGFNFPSTATNASFVLRKYYGSLLYHYEQIYYFKAPGWNREPSDVVQSPSPVPIPTPNVQQILHPQVNASQLPEATSISSAGTAVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNPALPTMPQHGSVPVYNSNTSSTALGVHRHRRKKCEIKKRDPGHPKPNRSGYNFFFAEQHARLKPLHHGKDREISKIIGELWNKLVEPEKAVYQEKALKDKERYQAEMENYREKLKTGQGIGDAAPLQEQIPDKDMMDADLKMDETEGAESLQTPDKSCSGESDSEDDKGTEHNMDVDASAGMIGVGANHLGAENLSKEKEGNDDGDQHAQKMDESSSMMVV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0188 433 SMART ARID_2 32 122 - -
Acco04g0188 433 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Acco04g0188 433 SUPERFAMILY HMG-box 243 327 IPR036910 -
Acco04g0188 433 SMART hmgende2 255 324 IPR009071 -
Acco04g0188 433 Gene3D - 26 133 IPR036431 GO:0003677
Acco04g0188 433 SMART bright_3 36 127 IPR001606 GO:0003677
Acco04g0188 433 Coils Coil 305 332 - -
Acco04g0188 433 CDD HMG-box_AtHMGB9-like 256 322 - -
Acco04g0188 433 MobiDBLite consensus disorder prediction 357 433 - -
Acco04g0188 433 SUPERFAMILY ARID-like 34 128 IPR036431 GO:0003677
Acco04g0188 433 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Acco04g0188 433 FunFam High mobility group B protein 15 29 142 - -
Acco04g0188 433 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 373 - -
Acco04g0188 433 Gene3D High mobility group box domain 240 334 IPR036910 -
Acco04g0188 433 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Acco04g0188 433 MobiDBLite consensus disorder prediction 371 386 - -
Acco04g0188 433 MobiDBLite consensus disorder prediction 405 423 - -
Acco04g0188 433 FunFam High mobility group B protein 15 238 333 - -
Acco04g0188 433 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Acco04g0188 433 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0188 Acco-ChrAcco04 1515325 1519070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0188 1 354 ARID Transcription Factor Family AT1G04880 56.952 3.45e-126 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Acco04g0188 ARID 1.6e-17 CL0123