Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0165 ATGTACCCTTCTTCCTCGTCGTCCTCCTCCCTATCCCAAAGCGGCTTAACCCGCTACGGTTCCGCCCCGGGCTCATTCCTCACCAACGCCGTTGATGCCGTTATCGGAGGAACTGACCGCGAATTCTCCACTACCGCCGCCGGATCACGCCCTCCGGTCACTCATTTATTCCCCGGCGAATCCTCCGAGTCCTCCTGCAAGGTCAGCAACCAATCCTCCGATCCAAAAGACCAGCAGCCTCCCAGGCTGAGTTTGCAGAGATCGTACGGTCTCCCTCCTGACGGCGCCGCCATCGGCTTTGGCATCTCTTCTTCGGCTTTGCTTCGTCAGAGAAGCTCGCCAGCTGGCTTCCTCAGTCATCTCACGGCTACTCCACCTGATAATGGAGGTTTCTCAATTTCAAGGGGCAGTGGAAGCTATAGCGCACAAGGCGCCTCCAATAGTGGCCATGGGATATCAAGGCTAAAATCTCAATTGAGCTTCACAGGGCAAGAATCTCTTTCACAGATATCGGAGGTGAGTGAACATGGTGATGGCATCAATTCTGACAATGGCCACCATAGAACTACACATTCTTATGCCACAAACAGCTTTGGAGTGGACACCTGGGACGGTTCAAACTCCATTGTGTTTTCTGCTCCCTCTAGCAAACGCGCCAAGACTATTGATGGAGACATTATGAACTGCATCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACAGTGGAGAAGCTACTTCATCATATTCCTGAAGATTCTGTCCCTTGTAAAATTCGTGCTAAGCGAGGCTGTGCTACTCATCCAAGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATCAGTGGGAAGCTGAAGAAGTTGCAAGATCTGGTGCCTAATATGGATAAGCAAACAAGCTATGCGGACATGCTGGATTTGGCTGTTCAACATATCAAAGGTCTACAAACTCAAGTTCAGAAGCTCCACAAAGAACTCGATAATTGCACCTGTGGATGTAAACAAAGCTCATAG 1032 0.499 MYPSSSSSSSLSQSGLTRYGSAPGSFLTNAVDAVIGGTDREFSTTAAGSRPPVTHLFPGESSESSCKVSNQSSDPKDQQPPRLSLQRSYGLPPDGAAIGFGISSSALLRQRSSPAGFLSHLTATPPDNGGFSISRGSGSYSAQGASNSGHGISRLKSQLSFTGQESLSQISEVSEHGDGINSDNGHHRTTHSYATNSFGVDTWDGSNSIVFSAPSSKRAKTIDGDIMNCINALESQFSLPQTTLEMATVEKLLHHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELDNCTCGCKQSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0165 343 SMART finulus 277 327 IPR011598 GO:0046983
Acco04g0165 343 Gene3D - 272 341 IPR036638 GO:0046983
Acco04g0165 343 CDD bHLH_AtbHLH_like 276 328 IPR045239 -
Acco04g0165 343 MobiDBLite consensus disorder prediction 58 85 - -
Acco04g0165 343 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 333 - -
Acco04g0165 343 FunFam Transcription factor bHLH130 family 272 341 - -
Acco04g0165 343 Pfam Helix-loop-helix DNA-binding domain 276 322 IPR011598 GO:0046983
Acco04g0165 343 MobiDBLite consensus disorder prediction 42 90 - -
Acco04g0165 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Acco04g0165 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 335 IPR036638 GO:0046983
Acco04g0165 343 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0165 Acco-ChrAcco04 1338020 1343954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0165 15 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 49.721 3.17e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g0165 HLH 5.2e-09 No_clan