Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0114 ATGGCTCACCCCAAACTGAAAACCCTATTCTCTCTCTCTATACTCATTTTCTCTCTCCTCTCCTTCGCCATAGCCGATGATGCAGCTTTCATGTCTAAGCTCGCCAAAGCCATCTCTGCTCCCTCTGACTGGTCCAGCAGCACCCCTTTCTGCAAATGGAACGGCGTCGATTGCGACGGCTCCGGCCGCGTCACCTCCATCCACCTTGCTTCCAAATCTCTTTCTGGCATTCTTCCTTCTGATCTTAACTCTCTCTCAGAGCTAACCTCCCTTTCTCTTCAGAACAATGCTCTCTACGGTCCTTTGCCGTCTCTGGCTAACCTCTCCTCGCTTAAAACTGTTTTCCTTGACTTCAACAATTTCACCTCCATCCCTGACGGTTGCTTCCAAGGGCTCACCAGCTTGCAGACCCTCAGCTTGAGCAACAACGCCGCCCTTGCACCCTGGACGCTGCCGACCGACTTGACCCAGTCTTCGAATCTGGTGACTCTTGATCTCGCAACGTCTAATCTAGTGGGCTCTTTGCCAGATATTTTTGGTTCTTTACCGAGCTTGCAGAGTGTGCGTCTTTCTTACAACAACCTCACTGGTGGGTTGCCTGCCTCGTTTAATGGATCGGGAATTGCAAGGCTATGGCTTAACAATCAACAAACTGGGTTATCCGGTCCAATCGACGTGTTATCATCAATGACCCAGTTGTCTCAGGTTTGGCTTCAGAAGAACCTGTTCACAGGTCCCATTCCCGACTTGTCCAATTGCAAGAGTTTGTTCGATTTGCAGCTTCGGGACAATCAGTTAACTGGTGTTGTCCCACCTTCTTTGATGACTCTCTCGAGCTTGCAGAACGTTTCTCTGGACAATGATAAGCTGCAGGGCCCGATGCCTCAGATTAAAGGTGCGAAGGTTAGTCTTGATGGGAATAGCTTTTGTAAAAGTACTCCGGGATCTTGTGATGATCGTGTCACAACGTTGCTTGAGATCGCTGCAGCTTTTGGGTATCCGGTTAAGTTGGCAGATTCATGGACCGGCAATGACCCCTGCAATGATTGGAGTTTCATTATGTGTACAGGTGTAAAGATCACCACGGTGAATTTGGCGAAACAGAATTTCGGGGGAATAATCTCATCTGCATTTGCGAATTTAACGGATTTAAAGAACTTGTATCTGAGTGGCAATAATTTGACTGGTTCAATACCAAAGAGCTTGACAACTTTGCGTCAACTTGAGATTCTTGATGTATCTAACAACAATCTATCTGGAGAGGTTCCTAACTTCTCATCAAAGGTGAAGCTGACATATACTGGTAATCTTTTGCTTGGCAAAACTACTGGTTCCGGAGGAGAAAATGGAGGTAGTCCTACCGCAGGTTCTGGTGATATTTCACCAGCTGGAAGCCCATCTGTAAAGGGAACTAGCACTTCATTGTCAGCTGGTTGGATTGCAGGTATAGTCATTATTGTCCTATTCTTTGTGGCGGTGGTGTTGTTTGTCTCCTGTAAATGTTATGCTAAAAGTCGTCATCAGAAATTTGGAAGGGTTAGCAATCCTGAAACGGGAAAGGGAGATGTTAAAATTGATGTATCGGGTGCTTCCAATGGATATGCTGGAGTTGCAAGCGATTTACATAGCCAGAGCAGTGGTGACCGTAGTGACCTTCATGTATTTGACGGCGGCAGTGCTACAATTTCAATTCAAGTTCTTCGCCAAGTAACGAATAATTTCAGTGAAGATAACATTTTGGGCAGGGGAGGATTTGGAGTTGTTTACAAAGGGGAATTGCATGATGGAACAAAAATTGCTGTGAAGAGGATGGAATCTGTTGCAATGGGAAACAAAGGATTGAATGAATTCCAAGCAGAGATTGCAGTCCTTAGTAAAGTCAGGCACAGGCATTTGGTTGCTCTTTTAGGATATTGCATTAATGGCAATGAAAGGCTCTTAGTTTATGAGTACATGCCTCAAGGCACACTAACGCAACATCTTTTTGAATGGGGTGAGAAGGGGTGCGCACCTCTAACTTGGAAGCAAAGGGTAGCAATAGCTTTGGATGTGGCAAGGGGAGTGGAATATTTGCATAGCTTAGCACAACAAAGCTTCATTCACAGAGACTTGAAGCCTTCAAACATACTTCTAGGTGATGACATGAGAGCGAAGGTTGCAGATTTTGGATTGGTTAAAAATGCACCTGATGGGAAGTATTCTGTTGAGACACGTTTGGCCGGAACTTTTGGGTATCTTGCGCCTGAATATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGGGTTGTTTTGATGGAATTGATCACTGGCAGAAAGGCATTGGACGACACTGTCCCAGATGAAAGGTCTCACTTGGTGTCATGGTTCCGTAGGGTTCTAATTAACAAAGAGAACATCCCCAAGGCTATTGATCAAACATTAGACCCTGACGAGGAGACAATGGAGAGCATATATAAGGTGGCCGAGCTTGCTGGGCATTGCACTGCTCGCGAGCCATACCAAAGGCCAGACATGGGCCATGCAGTGAATGTGTTGGTTCCTCTTGTAGAGCAGTGGAAACCACATAACCACGAAGAAGAAGAAAGTTATGGAATTGACCTTCACATGAGCCTACCTCAAGCTCTGCAAAGATGGCAAGCCAACGAAGGCACTTCTGCAATGCTCAATGACATGTCCCTCTCACAAACCCAATCCAGCATCCCCTCTAAACCTTCGGGATTCGCAGACTCCTTCGGTTCAATGGATTGCAGGTGA 2769 0.4605 MAHPKLKTLFSLSILIFSLLSFAIADDAAFMSKLAKAISAPSDWSSSTPFCKWNGVDCDGSGRVTSIHLASKSLSGILPSDLNSLSELTSLSLQNNALYGPLPSLANLSSLKTVFLDFNNFTSIPDGCFQGLTSLQTLSLSNNAALAPWTLPTDLTQSSNLVTLDLATSNLVGSLPDIFGSLPSLQSVRLSYNNLTGGLPASFNGSGIARLWLNNQQTGLSGPIDVLSSMTQLSQVWLQKNLFTGPIPDLSNCKSLFDLQLRDNQLTGVVPPSLMTLSSLQNVSLDNDKLQGPMPQIKGAKVSLDGNSFCKSTPGSCDDRVTTLLEIAAAFGYPVKLADSWTGNDPCNDWSFIMCTGVKITTVNLAKQNFGGIISSAFANLTDLKNLYLSGNNLTGSIPKSLTTLRQLEILDVSNNNLSGEVPNFSSKVKLTYTGNLLLGKTTGSGGENGGSPTAGSGDISPAGSPSVKGTSTSLSAGWIAGIVIIVLFFVAVVLFVSCKCYAKSRHQKFGRVSNPETGKGDVKIDVSGASNGYAGVASDLHSQSSGDRSDLHVFDGGSATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWGEKGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPHNHEEEESYGIDLHMSLPQALQRWQANEGTSAMLNDMSLSQTQSSIPSKPSGFADSFGSMDCR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0114 922 MobiDBLite consensus disorder prediction 444 467 - -
Acco04g0114 922 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g0114 922 Pfam Leucine rich repeat N-terminal domain 33 59 IPR013210 -
Acco04g0114 922 Pfam Leucine rich repeat N-terminal domain 319 355 IPR013210 -
Acco04g0114 922 FunFam Leucine-rich repeat receptor-like kinase 319 442 - -
Acco04g0114 922 FunFam receptor protein kinase TMK1 652 869 - -
Acco04g0114 922 MobiDBLite consensus disorder prediction 900 922 - -
Acco04g0114 922 SUPERFAMILY L domain-like 28 432 - -
Acco04g0114 922 CDD STKc_IRAK 580 853 - -
Acco04g0114 922 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g0114 922 Pfam Leucine rich repeat 360 418 IPR001611 GO:0005515
Acco04g0114 922 Pfam Leucine rich repeat 110 143 IPR001611 GO:0005515
Acco04g0114 922 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Acco04g0114 922 SMART LRR_typ_2 381 404 IPR003591 -
Acco04g0114 922 SMART LRR_typ_2 182 205 IPR003591 -
Acco04g0114 922 SMART LRR_typ_2 405 427 IPR003591 -
Acco04g0114 922 SMART LRR_typ_2 108 131 IPR003591 -
Acco04g0114 922 SMART LRR_typ_2 132 158 IPR003591 -
Acco04g0114 922 PANTHER OSJNBA0070M12.3 PROTEIN 12 922 - -
Acco04g0114 922 Gene3D Phosphorylase Kinase; domain 1 536 651 - -
Acco04g0114 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Acco04g0114 922 FunFam Receptor-like kinase TMK4 25 315 - -
Acco04g0114 922 Pfam Protein tyrosine and serine/threonine kinase 577 848 IPR001245 GO:0004672|GO:0006468
Acco04g0114 922 FunFam receptor protein kinase TMK1 536 651 - -
Acco04g0114 922 SUPERFAMILY Protein kinase-like (PK-like) 551 850 IPR011009 -
Acco04g0114 922 Gene3D Transferase(Phosphotransferase) domain 1 652 875 - -
Acco04g0114 922 Gene3D Ribonuclease Inhibitor 26 317 IPR032675 -
Acco04g0114 922 Gene3D Ribonuclease Inhibitor 318 443 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0114 Acco-ChrAcco04 968172 971536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0114 32 859 Receptor kinase-like Gene Family AT5G49660 31.270 4.41e-99 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Acco04g0114 PK_Tyr_Ser-Thr 1.1e-47 CL0016