LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0100	ATGGACGGCGGTGCGCCACCTTCCTCCGCTGGCTCCGGCGGAACTGGAGGTCCAGCACCTTTCCTTATCAAGACCTATGAAATGGTCGACGATTCTTCCACCAATGATATTGTATCGTGGAGCTCCACCAACAACAGCTTCGTCGTCTGGAATCACCCTGAGTTCGCTCGTCTTCTTCTTCCTACCTATTTCAAGCACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTACGGATTTCGAAAAATACATCCTGAGCGGTGGGAGTTCGCTAATGATGATTTTGTAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCAATCCTCCAGGCTCTGGTGTGGACCCAGAACGAGCAGTATTTGAGGAAGAAATAGAGAAACTTACACGTGAGAAATCTGCTCTTGAATCCAACATTGTCAGATTTAAACAACAAGCGGCTGTAAAGCTTCAGCTGGAAGATCTGTTACAGCGATTTGACGGTGTGGAGAAGAGACAGAAGAATCTGCTGAACTTCTTTGAAAAGTATCTTCAGAATCCTTGTTTTGTTGAACATCTTTCACGGAAACTTGATTGCATGGATTTATCAGCATATAATAAGAAAAGAAGATTACCTCAGGTGGATCACTCGGCGCCTGTTGGTGAAAGTAACTTGGTTGAAAATCATAGCAGTTTAAGAACAGAATTTGGCACTGTCTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAGTTATCACCAGCTGTATCAGATATGAATTTGGTATCACGCAGCACTCAGAGTTCCAATGAAGACGGGGAAAATCCACAGAAGAGGCCATCTGAAGGAACGCCCAAAGGAGTGCAGACAAGAACAACACTTGCATTTGCTCCTGAAACATTAGAGCTTGCAGATACTGGAGCATCTTTTTCTTTCAAGATGGATTCATGTCCATCACAAAGAGCAACAACTGCTGAGAGCACAAAACTACACTCTTTGCATCTAAGTAATGAAGAAGGTGACAGTCACATATCTTGCCATCTAAATCTGACTCTGGCATCTTCTTCTTTACAAGTTAACAGAAATCCATACTCGGCTAGATCACCACAAATAGACTGTCAGGAAATAGGCAAATTGGCGGAATCAAGATTTCAGGAAAACGATAAAGATTCTAACAGCGGAGTTCCTTCAACCAGAAATCCAGTTTATGAGGTTGCCACTTTAGCTTCCTCACAGTCAAAGGAAACTCCAAGCAGCAACCAAGCGCCACCAGCTGCTCCAGCCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCCAACTACAGAGAAAATCCATGCGAAGAGCAAGACGAAGGGCGATCAATTCCTGGAATCTCCAGAAATGTTAAGAATATGGATCGGCTCACACTTTGA	1464	0.4337	MDGGAPPSSAGSGGTGGPAPFLIKTYEMVDDSSTNDIVSWSSTNNSFVVWNHPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSNPPGSGVDPERAVFEEEIEKLTREKSALESNIVRFKQQAAVKLQLEDLLQRFDGVEKRQKNLLNFFEKYLQNPCFVEHLSRKLDCMDLSAYNKKRRLPQVDHSAPVGESNLVENHSSLRTEFGTVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKRPSEGTPKGVQTRTTLAFAPETLELADTGASFSFKMDSCPSQRATTAESTKLHSLHLSNEEGDSHISCHLNLTLASSSLQVNRNPYSARSPQIDCQEIGKLAESRFQENDKDSNSGVPSTRNPVYEVATLASSQSKETPSSNQAPPAAPARVNDVFWEQFLTERPGCSDNEEAISNYRENPCEEQDEGRSIPGISRNVKNMDRLTL	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0100	487	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	10	318	IPR027725	-
	Acco04g0100	487	MobiDBLite	consensus disorder prediction	448	487	-	-
	Acco04g0100	487	MobiDBLite	consensus disorder prediction	265	292	-	-
	Acco04g0100	487	MobiDBLite	consensus disorder prediction	457	471	-	-
	Acco04g0100	487	Coils	Coil	128	155	-	-
	Acco04g0100	487	FunFam	Heat shock transcription factor 1	14	111	-	-
	Acco04g0100	487	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco04g0100	487	Gene3D	-	16	111	IPR036388	-
	Acco04g0100	487	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0100	Acco-ChrAcco04	866982	870719	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0100	21	487	HSF	AT4G13980	55.603	2.93e-169	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Acco04g0100		HSF_DNA-bind	1e-30	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco04g0100	04	866982	870719	Acco04g0100	04	866982	870719	ECH