Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0053 ATGCGAACTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCCGAAAGTGCAGGTCCTGGCTCTTCTGCCAGCAATGTGGGAACTGGGAACCCTTCAGCTCCTACTCGCCCAGTCTATGTTCCTCCACATCTTCGGAATCGTCCACCTTCTGCAGAAGCCCCTGCTCCAGCAAATAGCGACCGTACTTCTGGTTCTGGTACTGGTGCTGGTACTGGTAATGTTGGATCACGTTTGGCTATGCCCAGAAATGATAATCGGTTTGGGTATGGTGGCGGTAGCCGTACTGGATGGGGAAACAGGGGCAGTGGTTGGGATCGTGGCAAAGAGAGGGAGGCCAATCCCTTTGGTGATGAGGATAATGCAGAAGAGGCAATTGATGAGCAGGATAATACAGGAATTAATTTTGATGCATATGAAGACATTCCTGTGGAGACTAGTGGTGCGAATGTGCCACCACCAGTGAATACATTTGCAGAGATTGAATTAGGTGAAGCACTTGATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCAGTTCAACGATATGCCATCCCAATATCTCTTGCTGGACGAGATTTGATGGCATGTGCCCAGACTGGTTCTGGAAAGACTGCTGCTTTCTGTTTTCCTATCATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCTCTTGTTCTCTCACCTACTAGGGAGCTATCAATGCAGATTCATGAAGAAGCCAGGAAGTTTTCTTACCAAACTGGGGTTAGGGTGGTTGTTGCTTACGGTGGTGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGGTTGGTGGATTTGCTAGAGAGGGCTAGAGTTTCACTGCAGATGATAAGATATTTAGCCTTAGATGAAGCAGACCGGATGCTGGATATGGGGTTTGAGCCACAAATAAGGAAGATTGTGGAGCAGATGGACATGCCTCCCCCAGGTGCTAGACAGACTATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCAGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGTTCAAGTACAGATTTGATTGTCCAAAGAGTTGAATTTGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCATTGGAACACTGGCTGTCTATTAATGGTTTTCCAGCTACCACTATTCATGGGGATAGGACGCAACAGGAGAGGGAAATGGCATTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCCCGCGGTCTTGACATTCCTCATGTTGCCCATGTGGTTAACTTTGATCTACCAAATGATATTGATGATTATGTACACCGTATTGGAAGGACTGGAAGAGCAGGAAAGAAAGGTCTTGCCACTGCTTTCTTCAATGAAAACAACGCATCCCTTGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGATCATCTTTCGGTGGAAGGAACCGCCGATCAGGTGGAGGTCGTTTTGGTGGCCGTGACTTCAGAAGAGAGAGCTTTAACAACAGAGGTGGTTCTGATTATTATGGTGGAGGAAATAGTGGTGGCGGGTATGGGGCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGCGTCACAAGTGCGTGGGATTGA 1842 0.4788 MRTSWADLAASSAAESAGPGSSASNVGTGNPSAPTRPVYVPPHLRNRPPSAEAPAPANSDRTSGSGTGAGTGNVGSRLAMPRNDNRFGYGGGSRTGWGNRGSGWDRGKEREANPFGDEDNAEEAIDEQDNTGINFDAYEDIPVETSGANVPPPVNTFAEIELGEALDQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLSINGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNASLARALADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRESFNNRGGSDYYGGGNSGGGYGASGGYAGGYGPGVTSAWD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0053 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 549 - -
Acco04g0053 613 SMART helicmild6 429 510 IPR001650 -
Acco04g0053 613 MobiDBLite consensus disorder prediction 1 32 - -
Acco04g0053 613 Gene3D - 111 373 IPR027417 -
Acco04g0053 613 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Acco04g0053 613 Pfam DEAD/DEAH box helicase 179 360 IPR011545 GO:0003676|GO:0005524
Acco04g0053 613 CDD SF2_C_DEAD 383 519 - -
Acco04g0053 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 371 IPR014001 -
Acco04g0053 613 FunFam ATP-dependent RNA helicase RhlB 374 553 - -
Acco04g0053 613 MobiDBLite consensus disorder prediction 1 120 - -
Acco04g0053 613 SMART ultradead3 174 386 IPR014001 -
Acco04g0053 613 Gene3D - 374 553 IPR027417 -
Acco04g0053 613 MobiDBLite consensus disorder prediction 35 49 - -
Acco04g0053 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 528 IPR027417 -
Acco04g0053 613 MobiDBLite consensus disorder prediction 103 117 - -
Acco04g0053 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 549 IPR001650 -
Acco04g0053 613 FunFam Probable ATP-dependent RNA helicase DDX4 118 373 - -
Acco04g0053 613 CDD DEADc_DDX3_DDX4 156 377 IPR044763 GO:0003724|GO:0005524
Acco04g0053 613 MobiDBLite consensus disorder prediction 56 72 - -
Acco04g0053 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0053 Acco-ChrAcco04 537615 543025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0053 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 8.77e-63 211