Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0028 ATGAGAAAGGCGTCGTCCCGGCCAAAGAGCAGCACCACCGGTACCACACCTTGCTGCAGCAAAGTAGGGCTCAAGAGAGGGCCTTGGACTCCTGAGGAAGACCAGCTCCTCTCCAACTACATCCACAAGGAGGGAGAGGGCAGGTGGCGCACCCTCCCCAAGAGAGCCGGTCTCCTCCGCTGCGGCAAAAGCTGCCGCCTCCGCTGGATGAACTATCTCCGCCCCTCCGTCAAGCGCGGCCACATCGCCCCCGACGAGGAGGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGATGGTCGCTGATAGCGGGGAGGATCCCTGGGAGAACGGACAACGAGATAAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTCATCAGCCAAGGCATTGATCCCCGTACCCACAAGCCCCTCCCGCCTCATACTATTACTAATGCTCATCCTTCTCCCTCTCAACCTGATCCCAATCCCATTCCCAATGTTACCGATCATCATCATCATCATGAGCAGGACCCCAATCCCTACTCTCACCCCTATGATCATCACGCTTTGCCCCTCGGGGATCTCCCTGCACTCCCCTTGCCCAATACCCCCAGCAATCCCCTTGACGACGACGACGACGACATCAACTACTCCACCGACGATGTTTTCTCCTCTTTCATCAACTCCCTCATCAACGACGATGCCTTTGCCTCCGCTCAACACCACCACCCCCCTCCTCCGCCTCCTCCTTTTAATTCTGCGGCCTGGGAGTCTTCCCTCGTCTCCGCTGCCCCCCACCACGATCCCAACAATATGCCCACTCATGCTCATGCTCATGCTGATGCTGTCCTCTAG 846 0.5804 MRKASSRPKSSTTGTTPCCSKVGLKRGPWTPEEDQLLSNYIHKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLPPHTITNAHPSPSQPDPNPIPNVTDHHHHHEQDPNPYSHPYDHHALPLGDLPALPLPNTPSNPLDDDDDDINYSTDDVFSSFINSLINDDAFASAQHHHPPPPPPPFNSAAWESSLVSAAPHHDPNNMPTHAHAHADAVL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0028 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Acco04g0028 281 MobiDBLite consensus disorder prediction 146 160 - -
Acco04g0028 281 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Acco04g0028 281 CDD SANT 28 73 IPR001005 -
Acco04g0028 281 MobiDBLite consensus disorder prediction 133 216 - -
Acco04g0028 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 156 - -
Acco04g0028 281 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Acco04g0028 281 MobiDBLite consensus disorder prediction 1 24 - -
Acco04g0028 281 MobiDBLite consensus disorder prediction 260 281 - -
Acco04g0028 281 FunFam transcription repressor MYB5-like 83 149 - -
Acco04g0028 281 FunFam Myb transcription factor 23 79 - -
Acco04g0028 281 SMART sant 78 126 IPR001005 -
Acco04g0028 281 SMART sant 25 75 IPR001005 -
Acco04g0028 281 Pfam Myb-like DNA-binding domain 84 124 IPR001005 -
Acco04g0028 281 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Acco04g0028 281 Gene3D - 83 145 - -
Acco04g0028 281 Gene3D - 23 79 - -
Acco04g0028 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Acco04g0028 281 CDD SANT 84 124 IPR001005 -
Acco04g0028 281 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Acco04g0028 281 MobiDBLite consensus disorder prediction 163 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0028 Acco-ChrAcco04 378681 379619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0028 15 230 MYB Transcription Factor Family AT3G13540 60.185 2.23e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g0028 Myb_DNA-binding 6.8e-15 CL0123