Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2438 ATGTACAGTGTTAGTTTTGCAAGCGAGTTGGTTCTCTTGAATGATCATGATGCTCCACCTCTCTGTTTTCCTCTTCACAAAACAATGGCTTTCTTCCTTTACTTTTTCTTCCTTCTCGTTTCATTTGCTTCTGCTTGCGATCGCTGCGTCCACCAAACTAAGGCTGCCTATTTCTCTGAAGGCGCTGCTCTTTCCTCTGGGGCATGTGGGTACGGCTCTTTGGCGTTGGAATTAAGTGGTGGACGCCTTGCAGCTGGTGTTCCTTCCTTCTACAAAAATGGAGCCGGTTGTGGTGCGTGCTTTCAGATAAGATGCAAGAGCTCAAGTCTGTGTAACAAATCAGGTGTCAGAGTTGTTTTGACCGATCTCAATACCCATAACGAAACTGATTTTGTGCTAAGCAGAAGTGCTTTCGAGGCCATGGCTCAGAAGGGTAGCGCTCAACAACTTTTGAAGCTTGGAATCTTGAATGTTGAATATAAGAGAGTTCCGTGTGAGTATACAAATAAGAACTTGGCGGTGCGGGTGGAAGAATCAAGCCAAAAACCATATTACTTGGCAATTGAATTTCTGTACCAAGGAGGTCAAACAGAGATAGTAGCCGTTGACGTTGCTCAGATTGAATCATCAAACTGGAGCTTCATGAGCAGAAACCATGGAGCAGTGTGGGACACAAGTAGGGTTCCAGGAGGAGCACTGCAAATGAGGATGGTGGTAACATCAGGGTACGATGGAAAATGGATGTGGGCAAAGAAGGTGTTGCCTGCTGATTGGAAAACAGGACAAGTGTATGACACTGGTGTTCAGATCACTGACATTGCTCAAGAGGCCTGTTCTCCCTGTGATGATGGCCCCTGGTCTTGA 864 0.4606 MYSVSFASELVLLNDHDAPPLCFPLHKTMAFFLYFFFLLVSFASACDRCVHQTKAAYFSEGAALSSGACGYGSLALELSGGRLAAGVPSFYKNGAGCGACFQIRCKSSSLCNKSGVRVVLTDLNTHNETDFVLSRSAFEAMAQKGSAQQLLKLGILNVEYKRVPCEYTNKNLAVRVEESSQKPYYLAIEFLYQGGQTEIVAVDVAQIESSNWSFMSRNHGAVWDTSRVPGGALQMRMVVTSGYDGKWMWAKKVLPADWKTGQVYDTGVQITDIAQEACSPCDDGPWS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2438 287 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Acco03g2438 287 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Acco03g2438 287 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Acco03g2438 287 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Acco03g2438 287 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Acco03g2438 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 170 IPR007112 -
Acco03g2438 287 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Acco03g2438 287 CDD DPBB_EXLA_N 41 167 - -
Acco03g2438 287 Pfam Lytic transglycolase 84 160 IPR009009 -
Acco03g2438 287 SUPERFAMILY PHL pollen allergen 170 265 IPR036749 -
Acco03g2438 287 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Acco03g2438 287 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Acco03g2438 287 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Acco03g2438 287 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Acco03g2438 287 PANTHER EXPANSIN-B3 38 269 - -
Acco03g2438 287 Gene3D - 167 271 IPR036749 -
Acco03g2438 287 Gene3D - 41 166 IPR036908 -
Acco03g2438 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Acco03g2438 287 SUPERFAMILY Barwin-like endoglucanases 35 169 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2438 Acco-ChrAcco03 49875915 49879393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2438 43 287 Expansin Gene Family AT4G38400 61.538 2.85e-105 305