Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2404 ATGGCATTCTTTCCAGGAAAGAAACGAGTATACTTTACAAAGACTCTCGAGACAATGGTTCGCAATCGCTATATGCATCTCATTTTTTTTGTCTTCTCAGCAATTTTGACTTCCCGGGGTTCTGCAATTACTGATCCGACTGATGTTGCAGCTCTGCGAGATCTATACGAGACGTTGAACCGGCCACCGGAGTTGAAGAACTGGAATCTTGAAGATCCCTGTGGGGAATCTTGGACTGGAGTAGCATGTTCTGGGTCGTCAGTCATACACCTAAAAATTCTAGGATTGAATCTCACAGGACATCTTGGAAGCCAGCTCCATAATCTACAAAAATTGAAGATGCTTGATGTCGGCTCCAATAACATAGGTGGGGAAATACCATCCAGCTTACCCTCAAATGCCACACATATAAATATGGCTTGCAACTATTTGAGTCAAAATATTCCTCACTCATTACCTATGTTGACAAGACTGCGACATTTGAATCTGAGCTACAATTTGCTATTTGGACCCATTGGCAATGTTTTTACAGGCCTGGATAATCTCATAGAGATGGACCTTTCATACAACAATTTCACAGGAGATCTGCCCAGTTCATTTGGTTCCTTGAAAAACCTCAATAGATTGTTCTTGCAAAATAATAACTTCACTGGGTCAGTCGCATATCTGGCTGACCTCCCCATTACAGATTTGAATATTCAAGGTAATCAATTTAGCGGCATTCTTCCGTGGGATTTTCAGTTCATACCAAATCTATGGATTGGAGGTAATAAATTCCATGCAGAAGGCAATTCTCCTCCATGGGATTTTCCTTTGGACAAAGCACCAGTTTTATACAACATTAGTCGCCCGCCCATGACTCAGGCAAATACCATCGAGAACCATTCCTCTCGCAAAGTAAGTGCGCACAAGAAGAAACTTGTGAGTGCTGGAGAAGCTGGAGAAGTAGCTTTTATGGTTGGTGGGGGAACGCTATTAGTTACAGGTGTGGCGCTCTTCATTGCAATCCGTATGAAACGATTGAATAAAAAGGAGCTCAAAAGCTTCCAAAGTAGCCATGGCTCATTGCAATCGGATGCATATATTTTAAACATAGAAAACTATCCTATCCCGCCAAAAGAAAGCCCAAGAGTCCCGCCATTTAATTCTGCATCCCTGTTGGCTCCAAGGCGATTGCCTTCCCTGCGCCAATACAGAGCAGAGAACATGCGAAGAAGAAGTTTTTCCACAACACGCAGATTCTCCGGAAGGGTAAGAGTTTACTCCGTGGGAGACCTTCAGGTGGCTACAGACAGCTTCAGTGAAGACAATTTTCTGGGAGAGGGATCAATGGGTTCTGCTTACAGAGCTGTGTTTCCAAATGGCCGAACTTTGGCTGTGAAGCATATCAACATGACGGGCCTGTCTTTACCCGAAGAGGAAACGTTTTTGGATGTCGTTTCCATCGCTTCCCGTCTGAAGCACCCCAACATCGTTGCGCTTAATGGCTATTGTATGGAGCACGGTCAGCGTCTTCTTGTTTACGATTATGTTAGAAACTTAACTCTGCACGATGCTCTTCACAGTGACGCATTCCCGCCTTTATCTTGGGCCCTCCGTCTCCGTATTGCCCTTGGTGTTGCTCAGGCTCTGGATTATTTGCACTCGACGTTCTCCCCTCCTGTAGCACACGGCAAATTGACCGCTGCCAATATCCTTCTCGACGAAAACATGGTGCCTCGTGTCTGTGACTGTGGCCTATCTATTTTGAGACCGCTAATGAGCTACATAGTCAAAGGTTCTGAACTTGCAGCTGAAGACGCAGGCTACATTGCACCGGACCACGGCCAACCAGGAATTAGCAACCCAAAGAATGACGTTTATGCCTTTGGGGTGTTACTTCTGGAATTATTAACGGGAAGGACACCTTACGACACTTCGAGGCCATGGGCAGAAAAATACCTGGGAAGATGGGCATCATTGAGGCTTCATGACAATGAGAGCTTGGAACACATGGTGGATCCAGGAATTAAAGGAAGTGTTTCAGCCAAAGCCCTCTCTCGTTATGCTGATATCGTCTCGCTCTGCATACAGCCCGTGAAGGAATTTCGACCAATAATGTCGGCGGTGGTGGACTCTCTTAAAATCTGTTCACAAAAGCTTACCATGGACAAACCCACCGCCACCAGTGGAAAAATTACTGACTTGGATCCACTTGACAGGTCTTTCCATTCAACCATCACCCGCTTTCCAGGTTCCCCCACTTCTACCTACGTATCCGCCTGA 2265 0.4556 MAFFPGKKRVYFTKTLETMVRNRYMHLIFFVFSAILTSRGSAITDPTDVAALRDLYETLNRPPELKNWNLEDPCGESWTGVACSGSSVIHLKILGLNLTGHLGSQLHNLQKLKMLDVGSNNIGGEIPSSLPSNATHINMACNYLSQNIPHSLPMLTRLRHLNLSYNLLFGPIGNVFTGLDNLIEMDLSYNNFTGDLPSSFGSLKNLNRLFLQNNNFTGSVAYLADLPITDLNIQGNQFSGILPWDFQFIPNLWIGGNKFHAEGNSPPWDFPLDKAPVLYNISRPPMTQANTIENHSSRKVSAHKKKLVSAGEAGEVAFMVGGGTLLVTGVALFIAIRMKRLNKKELKSFQSSHGSLQSDAYILNIENYPIPPKESPRVPPFNSASLLAPRRLPSLRQYRAENMRRRSFSTTRRFSGRVRVYSVGDLQVATDSFSEDNFLGEGSMGSAYRAVFPNGRTLAVKHINMTGLSLPEEETFLDVVSIASRLKHPNIVALNGYCMEHGQRLLVYDYVRNLTLHDALHSDAFPPLSWALRLRIALGVAQALDYLHSTFSPPVAHGKLTAANILLDENMVPRVCDCGLSILRPLMSYIVKGSELAAEDAGYIAPDHGQPGISNPKNDVYAFGVLLLELLTGRTPYDTSRPWAEKYLGRWASLRLHDNESLEHMVDPGIKGSVSAKALSRYADIVSLCIQPVKEFRPIMSAVVDSLKICSQKLTMDKPTATSGKITDLDPLDRSFHSTITRFPGSPTSTYVSA 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2404 754 Pfam Protein tyrosine and serine/threonine kinase 437 707 IPR001245 GO:0004672|GO:0006468
Acco03g2404 754 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 398 510 - -
Acco03g2404 754 FunFam Leucine-rich repeat receptor-like protein kinase 511 718 - -
Acco03g2404 754 SUPERFAMILY L domain-like 49 253 - -
Acco03g2404 754 Gene3D Ribonuclease Inhibitor 44 278 IPR032675 -
Acco03g2404 754 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 45 270 - -
Acco03g2404 754 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Acco03g2404 754 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 708 IPR046959 -
Acco03g2404 754 ProSiteProfiles Protein kinase domain profile. 433 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2404 754 ProSitePatterns Protein kinases ATP-binding region signature. 439 461 IPR017441 GO:0005524
Acco03g2404 754 Gene3D Transferase(Phosphotransferase) domain 1 512 727 - -
Acco03g2404 754 SUPERFAMILY Protein kinase-like (PK-like) 407 708 IPR011009 -
Acco03g2404 754 Pfam Leucine Rich Repeat 181 203 IPR001611 GO:0005515
Acco03g2404 754 Pfam Leucine Rich Repeat 157 176 IPR001611 GO:0005515
Acco03g2404 754 Gene3D Phosphorylase Kinase; domain 1 395 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2404 Acco-ChrAcco03 49593428 49598621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2404 16 754 Strubbelig Receptor Gene Family AT5G06820 50.740 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Acco03g2404 PK_Tyr_Ser-Thr 1e-31 CL0016