Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2403 ATGGATTTTGATGAATATGAGTACTTAGAGAAGACAGTTGAAAATCCTGAACTTCAGCAGAAGGAGAAAACTAATGGTTGTGATGGAACTGTAAAAGCTGAAGAGAGAGATCATAGTTGGAGCTCAAAGCATAAAGCTACTGAGAAGCTTGATGATATTGACCGCCATTCCAAGAAATTAAAATCTGGAGATGATTTTCATGGTTATGACAATCTCAAAGTAAGAGGGTCATCTCGGCATCGTTCATCATCCAGAGATGGAGACAAGGAGGAGAAGCATAGTAGAGTGAGAGACAGACACCGAGAACATGACCGTGACCGAGAAAGAGGCAAAAGAGACCGGGGAAATGAGGGTGAAAGAGAAATGGAGAGGGACCACTCACGGCGAAGCAGAAGTATATCTGAAAGAGATAGAGAGAGGAGTCGTGACAGAGACTACAGAGACAGAGAAAGAAGCCGGGACAAGGATTTCAGAGACAGAGAAAGGGGGAGAGAATCAAGGGAGTGGGATAGAGATAGCAGATTCTGGGAACTCGCAGATGTGGTAGAGCAATCCTCAGATGGTCTTTCTGGCAATTGGGCCAGGCACGGAACCTCAGATCATGGGTTTCAAATTTTCTCCCTTCCGGGGCGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATAATGGACCGCAATTCCCGTCGATCTAAGGGTGTTGGGTATATCGAGTTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCTAGCCAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAACTTGGTTCAGTCTACTGCATCTGTATCTAGTGAATCCACAGGTTTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACTGAAGCTGATATTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTGGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTATACGCCTTGAAGATGCAAGGAATGCCCAGAGCTTAAATGGACAACTGGAAATTGGTGGCAGGACAATAAAGGTATCTGCAGTTCTTGATCAAACCGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGGTGGCGGCATGTCCCTAAACGCATGTTCTCGGGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGGATCTGGTATTACTGGTTCCTTAGGTAATTCTGCTGCCAATAACACGGGCCTTAACCTACCAGCTACAGAACATGCGGGAGCTGCCTCTGTGGGTTCTCTACTGGTTTCTCCACTTGCTTCAGTTCCTTCGGCAGCTGGGTTTCCAGGTGGAAGTCTACAAATTCCCACTGCTACTGCTACATTTCCTACCATTGATACGATTGGTGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAAAAGGAACCGGACTTTGATTTGGATATTAAAGAAGACGTTGAAGTAGAATGCTCTAAGTTTGGAACGTTAACACATGTATATGTCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGAAAATACTCAAGCTGCTATAAGCGCACAGCGGTCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTTATGGTGCCTCAATTATATGAGGATAAGTTCAAAGACAGCAAATAG 1863 0.4514 MDFDEYEYLEKTVENPELQQKEKTNGCDGTVKAEERDHSWSSKHKATEKLDDIDRHSKKLKSGDDFHGYDNLKVRGSSRHRSSSRDGDKEEKHSRVRDRHREHDRDRERGKRDRGNEGEREMERDHSRRSRSISERDRERSRDRDYRDRERSRDKDFRDRERGRESREWDRDSRFWELADVVEQSSDGLSGNWARHGTSDHGFQIFSLPGRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSSQPLLGQPVMVKPSEAEKNLVQSTASVSSESTGFMGPYSGGARRLYVGNLHFSITEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFIRLEDARNAQSLNGQLEIGGRTIKVSAVLDQTGMQEVGGNTGDFDDDDGGGMSLNACSRALLMQKLDRSGTGSGITGSLGNSAANNTGLNLPATEHAGAASVGSLLVSPLASVPSAAGFPGGSLQIPTATATFPTIDTIGAPSECLLLKNMFDPKDEKEPDFDLDIKEDVEVECSKFGTLTHVYVDKNTAGFVYLRFENTQAAISAQRSLHGRWFAGKMITASFMVPQLYEDKFKDSK 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2403 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 406 IPR000504 GO:0003723
Acco03g2403 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 298 IPR000504 GO:0003723
Acco03g2403 620 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 618 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco03g2403 620 MobiDBLite consensus disorder prediction 27 165 - -
Acco03g2403 620 Gene3D - 224 315 IPR012677 -
Acco03g2403 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 412 IPR000504 GO:0003723
Acco03g2403 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 609 IPR000504 GO:0003723
Acco03g2403 620 FunFam Splicing factor, CC1-like protein 521 620 - -
Acco03g2403 620 FunFam RNA-binding protein 39 isoform X1 224 316 - -
Acco03g2403 620 SUPERFAMILY RNA-binding domain, RBD 224 322 IPR035979 GO:0003676
Acco03g2403 620 NCBIfam splicing factor, CC1-like family 111 618 IPR006509 GO:0003723|GO:0005634|GO:0006397
Acco03g2403 620 Gene3D - 316 438 IPR012677 -
Acco03g2403 620 Gene3D - 522 620 IPR012677 -
Acco03g2403 620 SMART rrm2_1 527 605 IPR003954 GO:0003676
Acco03g2403 620 SMART rrm2_1 336 408 IPR003954 GO:0003676
Acco03g2403 620 MobiDBLite consensus disorder prediction 1 18 - -
Acco03g2403 620 MobiDBLite consensus disorder prediction 207 228 - -
Acco03g2403 620 CDD RRM3_RBM39_like 525 607 - -
Acco03g2403 620 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 426 544 IPR029123 -
Acco03g2403 620 MobiDBLite consensus disorder prediction 1 165 - -
Acco03g2403 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 308 IPR000504 GO:0003723
Acco03g2403 620 SUPERFAMILY RNA-binding domain, RBD 523 606 IPR035979 GO:0003676
Acco03g2403 620 CDD RRM1_RBM39_like 232 304 - -
Acco03g2403 620 SUPERFAMILY RNA-binding domain, RBD 332 432 IPR035979 GO:0003676
Acco03g2403 620 SMART rrm1_1 232 304 IPR000504 GO:0003723
Acco03g2403 620 SMART rrm1_1 527 605 IPR000504 GO:0003723
Acco03g2403 620 SMART rrm1_1 336 408 IPR000504 GO:0003723
Acco03g2403 620 MobiDBLite consensus disorder prediction 187 228 - -
Acco03g2403 620 FunFam CC1-like, splicing factor 330 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2403 Acco-ChrAcco03 49580186 49587163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2403 232 398 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 6.61e-13 69.7