Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2374 ATGGCCTCTGGTGCTTCCTTTTATGAGGTGCTCGGGATTTCAATGGGGGCGAGCCGCCAAGAAATAAAGAGTGCCTACAGAAAACTTGCAAGAACATGTCACCCTGACGTGGTGGCCATGAAGCACAAGGCGGAATCGGGCAGCGAGTTCATGAAGATCCACTCAGCCTACTCAACTTTGTCAGACCCTCATAAGCGTGCTCAATATGACAGACAGCTTTATATGTACACAAGATCTCCTGAGTACTCATCTCTCCCCAGCCAAAATATGGAATCCAGATTTGGCCATAAATGGGAGACAGATCAGTGTTGTGTAATGAGAAATTATGTAATGTTGCAGCATGTAACCGAGGAAGCGCTAAAGCGAGAGAGAAAGAAGGAGATCGGAACGGAGATGGGTGAGAGGGTGACAGGGAAGGTGAAGTGGTTCAACGACCAGAAGGGTTTCGGCTTCATAACCCCTGACGATGGCGGCGAGGACCTCTTTGTTCACCAATCTGCGATCCGTGCTGAGGGATTTCGCAGTCTCGGCGATGGAGAGTCTGTCGAGTTTCTGATCGAATCCGACTCCGATGGTCGTTCCAAGGCTGTCGATGTTACCGGCCCCGCTGAGGCCAATGTTCAAGGGAGCCGACGCGGAGGCGGAGGCGGTCCTGGGGGAAACAGATCTTACGGTGGCGGCCGAGGCGGTGGTTTCGGCGGTGGCTACGGTTCTAGCGGTGGTTTTGGTGGCAGTCGTGGTGGAAGAGGCGGAGGTGGCGGCGGTTATGGCGGTGGGGGTGGCGGCGGTTATGGAGGTGGTGGTGGCGGAGGCGGAAGCTGTTATAACTGTGGTGAGGTTGGTCACCTGGCCAGGGATTGCTACCAGGGAGGAGGCGGCAGCGGAGGAGGAGGCGGAAAGTACGGCGGCGGAGGAGGCGGCGGCGGCGGCTGTTACGCCTGTGGGGAGTCTGGGCATTTTGCTAGGGACTGCCCAACCGGTGCTCGCTGA 990 0.5667 MASGASFYEVLGISMGASRQEIKSAYRKLARTCHPDVVAMKHKAESGSEFMKIHSAYSTLSDPHKRAQYDRQLYMYTRSPEYSSLPSQNMESRFGHKWETDQCCVMRNYVMLQHVTEEALKRERKKEIGTEMGERVTGKVKWFNDQKGFGFITPDDGGEDLFVHQSAIRAEGFRSLGDGESVEFLIESDSDGRSKAVDVTGPAEANVQGSRRGGGGGPGGNRSYGGGRGGGFGGGYGSSGGFGGSRGGRGGGGGGYGGGGGGGYGGGGGGGGSCYNCGEVGHLARDCYQGGGGSGGGGGKYGGGGGGGGGCYACGESGHFARDCPTGAR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2374 329 MobiDBLite consensus disorder prediction 193 226 - -
Acco03g2374 329 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Acco03g2374 329 SMART dnaj_3 5 65 IPR001623 -
Acco03g2374 329 ProSiteProfiles Zinc finger CCHC-type profile. 274 287 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 SUPERFAMILY Nucleic acid-binding proteins 132 200 IPR012340 -
Acco03g2374 329 ProSiteProfiles Zinc finger CCHC-type profile. 311 325 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 PRINTS Cold shock protein signature 174 192 IPR002059 GO:0003676
Acco03g2374 329 PRINTS Cold shock protein signature 159 168 IPR002059 GO:0003676
Acco03g2374 329 PRINTS Cold shock protein signature 138 153 IPR002059 GO:0003676
Acco03g2374 329 SUPERFAMILY Chaperone J-domain 5 78 IPR036869 -
Acco03g2374 329 SMART csp_8 137 202 IPR011129 GO:0003676
Acco03g2374 329 Gene3D - 269 296 - -
Acco03g2374 329 Gene3D - 307 329 - -
Acco03g2374 329 SUPERFAMILY Retrovirus zinc finger-like domains 266 327 IPR036875 GO:0003676|GO:0008270
Acco03g2374 329 CDD DnaJ 7 62 IPR001623 -
Acco03g2374 329 CDD CSP_CDS 136 201 IPR002059 GO:0003676
Acco03g2374 329 ProSiteProfiles Cold-shock (CSD) domain profile. 135 201 IPR002059 GO:0003676
Acco03g2374 329 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Acco03g2374 329 PRINTS DnaJ domain signature 8 26 IPR001623 -
Acco03g2374 329 PRINTS DnaJ domain signature 26 41 IPR001623 -
Acco03g2374 329 PRINTS DnaJ domain signature 45 65 IPR001623 -
Acco03g2374 329 Gene3D DnaJ domain 1 92 IPR036869 -
Acco03g2374 329 Pfam DnaJ domain 7 70 IPR001623 -
Acco03g2374 329 PANTHER COLD SHOCK DOMAIN PROTEIN 2 244 326 - -
Acco03g2374 329 Gene3D - 130 213 IPR012340 -
Acco03g2374 329 Pfam Zinc knuckle 273 287 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 Pfam Zinc knuckle 310 325 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 Pfam 'Cold-shock' DNA-binding domain 137 201 IPR002059 GO:0003676
Acco03g2374 329 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 SMART c2hcfinal6 310 326 IPR001878 GO:0003676|GO:0008270
Acco03g2374 329 ProSitePatterns Cold-shock (CSD) domain signature. 149 168 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2374 Acco-ChrAcco03 49397922 49400292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2374 8 70 C2H2 Transcription Factor Family AT1G74250 49.254 4.14e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Acco03g2374 CSD 5.7e-26 CL0021