Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2362 ATGACTTCCGGACATGAGGTTGGGCCCATGGATTGTACAGCTGCTAGAAAAACTCAAAAGGCTGACAGAGAAAAACTGAGGAGGGACCGGCTCAATGAACAGTTTGTAGAATTGGGTAGCATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTTGCTGACACAATTCAATTGCTCAAGGACCTTACTTCGCAAGTTGGTGAACTCAAAGAGGAATATGCCATGCTGACTGAAGAATCCCAAGAGTTGACTCAGGAGAAAAATGATCTTAGGGAAGAAAAGGCATCTCTTAAATCAGACATTGAAAGCTTCAATAACCAATACCAACAACGACTCAGCACTATGTTCCCTTGGACTGCGATGGATCACTCAGTTATGATGGCTCCTCCTTCATATCCATATCCAGTGCCAGTGCCTGTGGCAGTTCCTCCTGGTTCAATTCCCATGCAGCCATATCCCTTCTTTGCAAATCAAAATCCTGGGGTCATTCCAAATCCATGTTCAACATTTGTTCCTTATCTAGCCCCGAATACTCTTGCTGAACATCAATCCACACAATATGTAACCCCTCCACTTCATCCAGGTGGCAATTCCCATGCGTTAGGAACACAAGATCCCAGAAATAAATCACCCAGGGAGAGCAAGGTTGAAAATGATGAATGTGCTAATGATGTCACCACGGACCTGGAGTTGAAAACTCCTGGATCTGCGACTGATCAGGAGTTATCGTCTAGGCATAGAAAATCCAGCAGGTTGTGCACGAAGGAAAGCAGCTGCACTGAAGAGAGTTCATCCGGCAGGTGTTCTTCTTCTCATAGTGTACAGGATAGCTCATCAAGTAGCGTAGTTAGGAGCAGAAAAGCTGATAAATGA 882 0.4456 MTSGHEVGPMDCTAARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILADTIQLLKDLTSQVGELKEEYAMLTEESQELTQEKNDLREEKASLKSDIESFNNQYQQRLSTMFPWTAMDHSVMMAPPSYPYPVPVPVAVPPGSIPMQPYPFFANQNPGVIPNPCSTFVPYLAPNTLAEHQSTQYVTPPLHPGGNSHALGTQDPRNKSPRESKVENDECANDVTTDLELKTPGSATDQELSSRHRKSSRLCTKESSCTEESSSGRCSSSHSVQDSSSSSVVRSRKADK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2362 293 Gene3D - 14 117 IPR036638 GO:0046983
Acco03g2362 293 PANTHER TRANSCRIPTION FACTOR BHLH121 4 291 IPR044579 GO:0003700|GO:0006879
Acco03g2362 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 65 IPR011598 GO:0046983
Acco03g2362 293 CDD bHLH_AtILR3_like 20 94 - -
Acco03g2362 293 MobiDBLite consensus disorder prediction 190 293 - -
Acco03g2362 293 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Acco03g2362 293 SMART finulus 21 71 IPR011598 GO:0046983
Acco03g2362 293 MobiDBLite consensus disorder prediction 244 258 - -
Acco03g2362 293 MobiDBLite consensus disorder prediction 259 285 - -
Acco03g2362 293 MobiDBLite consensus disorder prediction 1 28 - -
Acco03g2362 293 Coils Coil 14 34 - -
Acco03g2362 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 86 IPR036638 GO:0046983
Acco03g2362 293 Coils Coil 55 110 - -
Acco03g2362 293 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2362 Acco-ChrAcco03 49345093 49346687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2362 10 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 60.400 3.35e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco03g2362 HLH 1.8e-09 No_clan