Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2324 ATGCTAGCACATTCATTCATTTCACTACAACAAAAGGCCGAAGGGAGAGGGGAAAACCCAAGATCACATGACATTCTTACGCCCCCGAAATTGCAATCGGAAGCTCGATTTAACCACAGAATGACAAACCCTGCCGGGGATCCTCCCTCGCCCTCGCGGTGCTTCCCGCCGCTGACGTCGCCTTCTACCGTCAAAGACATGCCACTCGCCCGGAGAGATGACGCGGATGAAGCGAAGACCCTCCTACACAGTGACGAAGCGGAAGAGGAACCATCCTATCCTTCTGTTCCACCTGCTTCCAGGGAAGTGTCAGAGGAAATCAATGTAGCTGACATTGCTGTGGAGACCAAGAAGATGGAGGAGGAGGCATGCGAGGCTTTCATGTCAAATGAAAATGAGGAAGCGGAGAAAGTAGTTATGGGAATGGAGACAGCTGACTCGTATGCAGCTTGCAGCTTAGGCGAGACAGCTGAAGCAGCGGAGGCATGGAAAATGGAAGAGGAAACCCAGGTAGCTATCATTCCTGAGGACATTACAAAGGCAGAAGATGAAGCCAATGTAGCTAACACTGTCGAGGACATTGCAAAGGTGGAAGAAGAAACTGATGTAGTTAACATTGCTGAGGATAATAAGAAAGTGGAAGAGGAAATTGATGTTGGTAACATGTCTGACGATAATACAAAGGTGGGGGAGGAAACTGATGTAGCTAACATTGCTGAGGATAATAAGAAGGTGCAAGGGGAAACTAATGTTGCCAACATGGCTGACGATAATACGAAGGTGGATGAGGAAACTAATGTAGCTAACATCAATGAAGACATTACAACGGTGGAAGAGGACACAGATGTAGCTGACATTTTTGAAGGGGAGGTTGATGAGGCTGCCATGTCTGACGAGAAAGAGGAAGCAGAAAAAGTTGTAGCTACGATGGAGCCAGCGGATACACATGTGGCTTGTTCCCTAGGTGAGACAACCGAAGCGTTGGATATCAGGGATGCATATGAAGAGGCAGATGATGATGGCATGCCAGAGGAGAATGAGGAAGCTGATAAAGTAGATGTGGGGATGGGGATGGAAGATGGGTATGTGACTTCCACCTGTGGCGAGACAACTGAAGCAGATGGAGTTGGCATGGAGGCTGAAGATAAGGAGGAGGCAGCAGAGGAGTTAAATGTGGTTGGCACAGTGGAAGGTACAACTGACACAGAAGAGGATGCAGATGGAGCTGGTGGAAGGGAAGAGGCCCTAGAGGCAGAAGAGGTGGAGGTAGCCAATGAAGCAGATCTGATGGAAGAGGAAGTAGATTTTGCTGAAGTTGCAGAATATACAGTGGGTGCTGAGTTGACTGAAGAGATGGAGATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCATGGGAAGAATTCAAAGTCTGTGGGAAGAGTTCCAGTTAGAAAAAGGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGATCGCAGGGGATGCCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCTTTCTTTCGAGCAAAGGGTAGATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTGTGTGTTAGGGGAAAGAATGGCTTTTGCGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAATTAGGGAGCAAGGACAAGGGACAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGACTACTACACAGACCTGAAAGGGAAGCTGTCTTTGACATATGATGAGCTTGCTCAAGCCAAAAACCCCTGGAAGGGATCTGATATCCATCTTACCAGTCAGGAATCACCTGATGAGCTCTATGAGGCTACTAATAATGATGGGGGATCACATTCAGATAGCTCTTCGGAAAATGTAGAAAGAAGTAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGTCCCGTTCCAAGGAGGGGAATTCACATAGCACAAGGACATTGAATGGTGACAAAGGGCCATCTGCAGATGAGAGGTCTGATTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGGAAAAGTCAAATAATTTGCGATGCTAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCACTTCCTATTAAAAGAAGATTCCCAGACTGAGGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAACCATTTGGAAGGTGATGGCAATATTGATTCCTATCCAAAGACTGGAAAAGACAAGAAACGTAAAACAAGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATATTGATGATTACGCAGCTGTTGATAATCATAATATTAATTTAATTTATCTTAGACGCAATTTGATGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCTGAGCCATATAAAGTTGGTAAAAGGGTGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCAATGGCACTGCAAGCAGTCAGAGTAAAAGATTGGTTCGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAATATCCTTGTGTCATGAACTTATTTATTTTTAAAGAATGTGTAGAGAAGTTGCAGCTTTTAAAAACACCTGAGGAACGTCAGCGAAGATTGGAGGAAATTCCTGAAATACATGCGGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAGGAGGAAGAAACTGATCCTAAACGACCAGAGACTTACATGAGACCCAGAGGAATGGCATTTGAACGAAGGGGGAGAGAAACCGTTTCTCCTAGAACAGGTGGTTCTAATTCAAATGATTCATGGAGTGGAGCAAGGAACTATTCTAATATTAATCGTGAGCTAAGCAGGAATTTGTCTAATAAAGGACTCTCGGTTAAATTTGATGACGTGTCTAATGCATCTGAGGTATTGAATGATAGTCAAATCCTCCGAGGGAGAGAGAGGGAAACACAACTATCTAACAGCTGGGAGGGACAAAAACTACATTCAAGCTTAGAGAGTAGTGGCAAAAGTATCCAGCCTGTGGTAGCATCTGAGTCTCTTTCTACTACTGTGTCCAATGCTTCTGCTGTATCATCAACTGGCATAGCACCGCCTGCTGTGAAAATTAATGAATCAGAAAAGATTTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAGCACGGGGTATTTTCCTGTTGATTTGAGAATTTGGAGAGCCCCTGAGAAACAAGATGAGTCTATACTCTTAACTAATGCCTTAGCTGGAAACTTTTCTAAGGAGTCATCTGCAGTGGATAAAACTTTTCCGAAGGCTCAGGTGGCGCATAATTTGAATTATGCAGCTTCACACTCCGGAAAACTTCATTTGCCTGCACAAAGTGTAGATGCTCAAGTTGGAGGAAGATCGACATTTGATCAGAGCAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTGGGTCAAACTACTGGAGGAAGTTGGAGATTCGAAGATAATAATTCTGTAGCAAATAGGCCTTCTCCAATGACAGTTGAGATTCCCAAGATCCCTTCTAATGTACGGGGGCCTGACACTGGTATTATGATTGAATCAGCGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGGCTAAAGCGCAGGCTTTTGAAAATAAATGGTCACCAACTCCAGTCCACCCTGCTGGTTCTCTTGTAGGGAGTCCTTTTGCAGCAGAGAAAGTGGTGCAAAGTGCTGAAAGTGGTTCAAGTTCACAACCAGCTCAGATTCCAGCCCCAAATCCTGGTATTCCTCTTGGTCATCCTCAAGCAACAATGGTGGCTCCTATTACAGCAGATGCCTCTAGAAATACAGGCAACCACAATTCTCATGCTGAAGCTCAAGGTTGGGTATCTGGATTGGTTCAGAAACCAGAAATGGCTGGTTCAATTCAGATACGAGGGGGTGAACCACAGGCCTGGGGAGGTGTCCATTCAAGGGTAGAATCAAATAATACTGCTGCTATGCCACCGCCTACTCATGGCCACTGGGCAGATGCTTCATCTATCCGGAATGCTGCCTCATTTAACCCTGGAAATCCAATGGGGAATTTACCCATGCCAGGCATTCAAGACTTGAGACCACCAACTTCAAGTAATCAGGGTAACATTCCTGCTGCTTTCCCACCCAACATGCCTTGGGGCATGACTGTTGCAGAAAATCAAAATGCTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCCAATATGAACATGAATTGGATGCCTGGCCAAGGTCCAGCACCAGGAAACGCAAATCCAGGATGGGCGGCTCCCAGTCAGGGACCATCTTCAGTAATCCCTACCAGTTGGGTTCCACCTGGTCAAGGCCATCCTAATGCTAACGGAGCTTGGGTTGTGCCAGGTCAAGGTCCTGCATCTGTTGGTGCTAATCCTGGTTGGGTGGCTCCGGCCGGGGGCCAAGGCATGTGGAGTAATGAACAAAACCATAATGGAGACAGGTTCTCGAACCACAGGGATCGTGGCCCTCATGGTGAATCAGGTTATGGAGGAGAGAAAACATGGAACAGACAGTCTTCATTTGGTAGTGGAGGCCGGGGAGGAGGTTCTTCAGGGCCTCCCTTTGCGCAGAGAGGAGTGTGCAAGTTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTACCTGCACCCCTGA 5244 0.4519 MLAHSFISLQQKAEGRGENPRSHDILTPPKLQSEARFNHRMTNPAGDPPSPSRCFPPLTSPSTVKDMPLARRDDADEAKTLLHSDEAEEEPSYPSVPPASREVSEEINVADIAVETKKMEEEACEAFMSNENEEAEKVVMGMETADSYAACSLGETAEAAEAWKMEEETQVAIIPEDITKAEDEANVANTVEDIAKVEEETDVVNIAEDNKKVEEEIDVGNMSDDNTKVGEETDVANIAEDNKKVQGETNVANMADDNTKVDEETNVANINEDITTVEEDTDVADIFEGEVDEAAMSDEKEEAEKVVATMEPADTHVACSLGETTEALDIRDAYEEADDDGMPEENEEADKVDVGMGMEDGYVTSTCGETTEADGVGMEAEDKEEAAEELNVVGTVEGTTDTEEDADGAGGREEALEAEEVEVANEADLMEEEVDFAEVAEYTVGAELTEEMEMAEEQGRSVSSGKRKHGKNSKSVGRVPVRKRVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGRWNCGWHLCSNCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGSKDKGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDIHLTSQESPDELYEATNNDGGSHSDSSSENVERSSVKRRKANKRLKSRSKEGNSHSTRTLNGDKGPSADERSDWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKKRKTRKKSDERGLQSNIDDYAAVDNHNINLIYLRRNLMEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRVTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWFETEIVRLSHLRDRASEKGRRKEYPCVMNLFIFKECVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEEEETDPKRPETYMRPRGMAFERRGRETVSPRTGGSNSNDSWSGARNYSNINRELSRNLSNKGLSVKFDDVSNASEVLNDSQILRGRERETQLSNSWEGQKLHSSLESSGKSIQPVVASESLSTTVSNASAVSSTGIAPPAVKINESEKIWHYKDPSGKVQGPFSMAQLRKWNSTGYFPVDLRIWRAPEKQDESILLTNALAGNFSKESSAVDKTFPKAQVAHNLNYAASHSGKLHLPAQSVDAQVGGRSTFDQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSPMTVEIPKIPSNVRGPDTGIMIESANLPSPTPQTTSYGAKAQAFENKWSPTPVHPAGSLVGSPFAAEKVVQSAESGSSSQPAQIPAPNPGIPLGHPQATMVAPITADASRNTGNHNSHAEAQGWVSGLVQKPEMAGSIQIRGGEPQAWGGVHSRVESNNTAAMPPPTHGHWADASSIRNAASFNPGNPMGNLPMPGIQDLRPPTSSNQGNIPAAFPPNMPWGMTVAENQNASWGVMPGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWAAPSQGPSSVIPTSWVPPGQGHPNANGAWVVPGQGPASVGANPGWVAPAGGQGMWSNEQNHNGDRFSNHRDRGPHGESGYGGEKTWNRQSSFGSGGRGGGSSGPPFAQRGVCKFHESGHCKKGAFCDYLHP 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2324 1747 ProSiteProfiles SWIB/MDM2 domain profile. 706 789 IPR003121 -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1417 1436 - -
Acco03g2324 1747 ProSiteProfiles GYF domain profile. 1204 1258 IPR003169 GO:0005515
Acco03g2324 1747 SMART gyf_5 1205 1260 IPR003169 GO:0005515
Acco03g2324 1747 CDD SWIB-MDM2_like 712 787 - -
Acco03g2324 1747 FunFam Zinc finger CCCH domain-containing protein 19 699 794 - -
Acco03g2324 1747 Coils Coil 180 216 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1 103 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1038 1102 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 649 667 - -
Acco03g2324 1747 Gene3D SWIB/MDM2 domain 700 797 IPR036885 -
Acco03g2324 1747 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 416 1747 - -
Acco03g2324 1747 Pfam SWIB/MDM2 domain 714 787 IPR003121 -
Acco03g2324 1747 SUPERFAMILY Plus3-like 849 978 IPR036128 GO:0003677
Acco03g2324 1747 MobiDBLite consensus disorder prediction 794 837 - -
Acco03g2324 1747 SUPERFAMILY SWIB/MDM2 domain 711 788 IPR036885 -
Acco03g2324 1747 Coils Coil 413 433 - -
Acco03g2324 1747 ProSiteProfiles Zinc finger C3H1-type profile. 1722 1747 IPR000571 GO:0046872
Acco03g2324 1747 FunFam Zinc finger CCCH domain-containing protein 19 480 579 - -
Acco03g2324 1747 SMART rtf1 848 958 IPR004343 GO:0003677
Acco03g2324 1747 MobiDBLite consensus disorder prediction 67 90 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1699 1713 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1086 1102 - -
Acco03g2324 1747 Pfam Plus-3 domain 853 956 IPR004343 GO:0003677
Acco03g2324 1747 ProSitePatterns Zinc finger PHD-type signature. 490 550 IPR019786 -
Acco03g2324 1747 Gene3D - 1206 1264 IPR035445 -
Acco03g2324 1747 Pfam GYF domain 1207 1246 IPR003169 GO:0005515
Acco03g2324 1747 CDD PHD5_NSD 489 534 - -
Acco03g2324 1747 FunFam Zinc finger CCCH domain-containing protein 19 849 978 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1679 1694 - -
Acco03g2324 1747 SMART swib_2 721 792 IPR019835 -
Acco03g2324 1747 CDD GYF 1204 1259 IPR003169 GO:0005515
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1666 1720 - -
Acco03g2324 1747 SUPERFAMILY FYVE/PHD zinc finger 474 535 IPR011011 -
Acco03g2324 1747 Gene3D - 849 978 IPR036128 GO:0003677
Acco03g2324 1747 ProSiteProfiles Zinc finger PHD-type profile. 487 553 IPR019787 -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 453 475 - -
Acco03g2324 1747 MobiDBLite consensus disorder prediction 1058 1085 - -
Acco03g2324 1747 ProSiteProfiles Plus3 domain profile. 848 981 IPR004343 GO:0003677
Acco03g2324 1747 MobiDBLite consensus disorder prediction 649 709 - -
Acco03g2324 1747 SMART PHD_3 489 535 IPR001965 -
Acco03g2324 1747 SUPERFAMILY GYF domain 1194 1257 IPR035445 -
Acco03g2324 1747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 581 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2324 Acco-ChrAcco03 49063325 49075313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2324 445 558 PHD Transcription Factor Family AT5G58610 28.000 3.18e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Acco03g2324 Plus-3 1.6e-23 No_clan