Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco03g2309 | ATGGTGCGTACTTTGGCAGCTCACTCAGCAAGGAGAAGCAGTGAAAGACTAATGATTTGCCCACATTCAAACAAAGTCGGCCCAAATTTTCTGGCGGGAAAACCATGTCTTCCTCCCGCCATATGCAGTAGCAGAACGCCTTTGGAGTTCCATTTCCCTTCTTTCCCTCTACTCGTGTGCTTGTTGCTTTTACCAATAGTCATGGCTTCCGATTCTTCTCCGCCTAATTTCAACAACGGTCCTTCCTCTCCCGACGATTCAATTTCCAGCCCAATCGGCAACACATTATCTTCTCCCGGGGATGCTGCTCGCCACAGAGGTCGTCGGCGCTCATCGACACCGTCTGCTTTCGCAACTCCTCCGTCTAATCGATCTCGATTTGCCTCCTCCGATGCTACCCCGTCTCCATCGAGGTCCAGGCAAAGGGGAGGTGGTCGGAGGGCGTCTATGTCCACCCCTATTGCAGCCACGCCCACGTCTACGGATGACGCGCCCATGTCATCAGAAGGTGGAGAGGGTTACAATGCAGACGACATCAGGCCTACGTTCGTCTGGGGTACTAATATAAGCGTCGAAGACGTGAATGAAGCGATTCAGAGGTTTTTAAAGCACTTCATTGAGCAGTCATCTCAAAGCGATGGGCTGCTTGTGGAGGGGAAATATGAGATTGCTATCAAACAACTCATTGAAATTGAGGGAGATTCATTAGACGTCGATGCACACGATGTATTTGATTATGATCCAGACTTGTACACAAAAATGGTCAGATATCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTCTGATGAATATGGTCAGTAGAATCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTAAAAACCTCGACTTCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCCATTATACCAGAAATCAGGGAAGCTATATTTAGATGTCTCGTGTGTGGATGCTGCTCAGAACCGGTTGCCGTAGAGAGAGGGCGAATAAGTGAGCCTACTAAATGTCCAAGGGAAGAGTGTCAAGCCAAAAATTCCATGACACTGGTTCACAACCGATGCAGTTTCACAGACAAGCAAATTGTGAGGCTACAGGAGACACCTGATGAGATACCTGAAGGGGGAACACCACACACTGTAAGCTTGCTGATGCATGACAAGCTGGTAGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTTAGGGTTGGACCAACTCAAAGAACTGTTAAATCACTGTTCAAGACTTTCATTGACTGTCTTCATATTAAGAAGACTGATAAGTCAAGAATGCTGTCAGAGGATGCAATGGACGTTGAAACTAGCCTGGGCAACCGAAATACAGAAGAAATTCATTTTGATGAAGAAAAGGTGGCTCAACTGAAAGAGCTCTCAAAACAGCCAGATATATATGAAAGGCTGACAAAGTCACTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGAAGTGCTTTGAAGTTGGCATCTGGCGCTAACTTCCGTGGTGATATTAATATCTTATTAGTTGGTGATCCTGGAACCAGCAAATCCCAGCTACTCCAATACATACATAAACTTTCTCCACGTGGCATTTACACAAGTGGAAGGGGTAGCTCTGCTGTTGGACTGACTGCTTATGTTACCAAAGATCCTGAAACAGGCGAAACGGTTCTCGAGAGTGGCGCTCTAGTTTTAAGTGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAGACTATTTCAATAGCGAAAGCAGGTATTATTGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAATCCTAGTGGGTCGCGGTATAACCCCCGCTTGTCTGTCATTGACAACATACAACTTCCTCCTACACTTCTGTCCAGGTTCGATTTGATCTACTTGATTCTCGACAAGGCTGATGAACAGACAGATAGACGACTTGCCAAACATATTGTTTCTTTACACTTTGAGAATCCTGAGAGCTCAGAGCAAGATGTGTTGGATCTTCCTACGTTAACTACTTATGTGGGTTATGCTCGGAAGCATATACACCCACAACTATCTGATGAAGCTGCCGAAGAACTGACTAGAGGTTATGTTGAGATAAGAAGAAGAGGAAATTTTCCAGGGAGCAGCAAGAAGGTGATTACAGCAACACCAAGGCAGATTGAGAGTCTAATACGGCTTAGCGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAAAAGCGGGATGTAATGGAGGCTTTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACCGATCACTCTACCGGAACCATTGACATGGATCTTATTACTACTGGAGTTTCTGCAAGTGAAAGGATGAGACGAGAAAGTCTGGTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTGTTGGAGTTACTGGAGGAGTTGAAGAAACAGAGCGCCAGTGAACTCCACCTCAGTGATGTAAGAAATGCAGTTGCTACTTTGGCCAGTGAAGGAGTTGTTGCTCTGCATGGTGACAGTATAAAAAGATCGTTGTGCGACGCAAGGCTATCTTCGGTGGTCGAGAGGATGGAGTACGAGTAA | 2769 | 0.4572 | MVRTLAAHSARRSSERLMICPHSNKVGPNFLAGKPCLPPAICSSRTPLEFHFPSFPLLVCLLLLPIVMASDSSPPNFNNGPSSPDDSISSPIGNTLSSPGDAARHRGRRRSSTPSAFATPPSNRSRFASSDATPSPSRSRQRGGGRRASMSTPIAATPTSTDDAPMSSEGGEGYNADDIRPTFVWGTNISVEDVNEAIQRFLKHFIEQSSQSDGLLVEGKYEIAIKQLIEIEGDSLDVDAHDVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGCCSEPVAVERGRISEPTKCPREECQAKNSMTLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTFIDCLHIKKTDKSRMLSEDAMDVETSLGNRNTEEIHFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGSALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTISIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESSEQDVLDLPTLTTYVGYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQATRNIIMEKMQIGGPSMRLLELLEELKKQSASELHLSDVRNAVATLASEGVVALHGDSIKRSLCDARLSSVVERMEYE | 922 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 513 | 524 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 319 | 332 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 811 | 820 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 370 | 382 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 659 | 676 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Acco03g2309 | 922 | Pfam | MCM OB domain | 297 | 426 | IPR033762 | - | |
| Acco03g2309 | 922 | FunFam | DNA helicase | 324 | 376 | - | - | |
| Acco03g2309 | 922 | Pfam | MCM P-loop domain | 485 | 707 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | Gene3D | - | 324 | 376 | - | - | |
| Acco03g2309 | 922 | Pfam | MCM N-terminal domain | 196 | 293 | IPR027925 | - | |
| Acco03g2309 | 922 | SUPERFAMILY | Nucleic acid-binding proteins | 218 | 447 | IPR012340 | - | |
| Acco03g2309 | 922 | CDD | MCM4 | 500 | 809 | - | - | |
| Acco03g2309 | 922 | Gene3D | - | 816 | 900 | IPR036388 | - | |
| Acco03g2309 | 922 | FunFam | DNA helicase | 478 | 816 | - | - | |
| Acco03g2309 | 922 | ProSiteProfiles | MCM family domain profile. | 497 | 703 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | MobiDBLite | consensus disorder prediction | 75 | 97 | - | - | |
| Acco03g2309 | 922 | Pfam | MCM AAA-lid domain | 723 | 809 | IPR041562 | - | |
| Acco03g2309 | 922 | Gene3D | - | 297 | 436 | IPR012340 | - | |
| Acco03g2309 | 922 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 195 | 869 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | MobiDBLite | consensus disorder prediction | 112 | 166 | - | - | |
| Acco03g2309 | 922 | ProSitePatterns | MCM family signature. | 606 | 614 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Acco03g2309 | 922 | Gene3D | - | 188 | 291 | - | - | |
| Acco03g2309 | 922 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 508 | 823 | IPR027417 | - | |
| Acco03g2309 | 922 | Gene3D | - | 475 | 815 | IPR027417 | - | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 598 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 626 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 538 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 677 | 685 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 650 | 662 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | SMART | mcm | 293 | 811 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g2309 | 922 | MobiDBLite | consensus disorder prediction | 75 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco03g2309 | Acco-ChrAcco03 | 48861200 | 48868984 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco03g2309 | 68 | 905 | Core DNA Replication Machinery Family | AT2G16440 | 75.618 | 0.0 | 1278 |