Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2303 ATGCCAGACGACGCCACGCTAGTGCCAGTGGGAACTCTTCAACTTTGCCGGCGGCGAAGCGGGCGAGAAGGCGGGGGCCCTGGCCGTGGTCCGCCAGTCCGCCACGCACTGAAACGTCCTGACCTCTTCTTCTGGGTTGAAGAATATTTCCACTCCCCTTCCGTACAGCCTCACCGGCACAGCCTTCGAGCGGTCTTTGCTCACGGCTCTCGCTCCATTTGGTGCAATCAATCACCACCCTGTAGTGTACAACTTCAAGTTTTTGCTTGTCAAGCGTTTTCCTTGTGTTCGACCATGGGGAAGAAGAAAGTGAAGGAAGGTGGAGGGAAAGAGCACTGCCCCTCGACTGTGTTTGTCTCAAACTTGCCCTACTCATTCACTAATTCTCAGCTGGAGGAGATGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGCGGTTTTGGTTATGTTCAATTTGCTGTGGAGGAAGATGCTAACCGTGCAATTGAGTTGAAGAATGGCTCATCCGTTGGAGGCCGTAAAATTGCAGTAAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCACGACAGTCAAAGTCAAATCAAGAGAATGCTGATGATATCCCAAAATCAAAAAATGATGACAATGATGGTGGCTTTTCTGAAGTGAAGAAGCCCTCTTCAGTTATTAAGGAAAAAGTCATAAGTAATGAAAACCATTCAAGGAAGCCTAGTGAAGTGAAAAAGGCAGTTCTTTGTAGTGATATAGCTGATGAGGGGGGTTGTTCTGAAAAGCAAAGGGTTGCTAGAACTGTTATTTTTGGTGGTCTTATCAATTCAGATATGGCTGAAGTTGTTCACAGCCGAGCAAGGGAGATTGGCAGTGTTTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAAATGCATGGTCTCTTGCAAGAGGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCCGTTGTGTCACTTCATCAGGAAGAAATTGGAGGAGGAACTGTTTGGGCACGCCAATTGGGTGGAGAGGGCTCCAAGACACAAAAATGGAAGCTTATTGTAAGAAATCTTCCATTCAAGGCCAAGGAAAACGAAGTAAAAGAAATGTTTTTATCTGCTGGGTTTGTGTGGGATGTATCTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCTTTTGTAAAATTCACTTGCAAGCAAGATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGTTTGGCAAACGGCTCATGGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTGATACAAATGCTAAGCTTGCTTTAGAAAATGGACAACATAAGGTGACAGATGAAGGTGGTAGTAGTTCTGAGAACAATTCAGATGATGATGTTGAAGATACAGGGAAACAGGCCCATCAAGAAGATGATACTGATCAAGATGACTCCAACTCCACACAGGAAGAAGAGGTACCATCTGAAGTTAACTTTGATGAGGAAGCTGAGATTGCCAAAAAGGTTCTTAAGAACCTCATCACATCCTCCACCGAAGGAACATCCGCAAATGATGATTTCATGTCGCCCAAGAAAAAGAAGGAATCAAAATCCAATAAAAATGTTGACGAGGCAGATAAAAAATCATCTAAGGAGTTAGAAGAGGTTAAAGATGTTGCTGAGCTTGAAATCTTGGACAGAAGCACGGCATCTAATCTTAAGCAAACAGAAGAAGATTTGCAGGGAACAGTTTTCATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAGTGGAATACTTTGCTCCAGTCCTCCACCAGGTGACCAAACGGCCAAGGGGAACTGGTTTTCTCAAGTTCAAAACTGCTGAGGCTGCTGATGCTGCTGTTTCAACTGCTACTGCTGCTTCTGGCTTGGGCATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTGAGGGCTTTAGATAAGAAGTCGGCTCATGATAAGGAACTAAAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAGAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATTTACAACTTACCAAAGTCAATGACTGAAAAAGAGCTCAAGAAGCTTTGCATTGATGCAGTTACCTCCAGAGCCACCAAGCAGAAGCCTCAAATTCGGCAGATAAAGTTCTTGAAGGATGTGAAGAAAGGAAAGGTGGTTACGAAATATCATTCACGTGGAGTTGCGTTTGTTGAACTTTCAGAGCATCAACATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGACACTTTTGGTCCTGAACATCGCCCAATTGTGGAGTTCGCTGTTGATAATGTTCAAACACTTAAACTTCGGAAAACAATGCTACAGTCTCAGCAGCAGGCCGCTGTTCATGGTGACAGCAAGGTTGAGGAAAATGAGGAATCAGGTTTCCATACCAATCAAAAGGATGGAAAACGAAAAGTACAGGCTCAGGACAAACCAGTAAAGGATTCAGTGCTCGATAAAGATGAATTAGTAAGTACATTGCCAAATCAAAATGCCAAAAGGCAGAAAGGCAATCGTAAGAGTAAAAAGGCAGAAGGGTCATTGTCACGTAAAGAAAATTCAAAAGCCTTGTGCATGAAGCCAAATAATCACCAAGATGACCAGAATCATGGTGGTAGGACGTCAAACACTGTTATTGACTCCCACAAAACAATCAATGGTAAGAAAGTACATCCCGGCTTGAAGAGGAGGACACAGAATCAGGCCGAAGCTGGGGAAAATGTCCCAAGGAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAAGACGTGGTAGATAAGCTTGACATGCTTATACAGCAGTATAGATCAAAGTTCTCGCAGCAAGGTTCGCAAGGGAATGATGGAGAGAAAAAACCCTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 3150 0.4352 MPDDATLVPVGTLQLCRRRSGREGGGPGRGPPVRHALKRPDLFFWVEEYFHSPSVQPHRHSLRAVFAHGSRSIWCNQSPPCSVQLQVFACQAFSLCSTMGKKKVKEGGGKEHCPSTVFVSNLPYSFTNSQLEEMFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPPREARQSKSNQENADDIPKSKNDDNDGGFSEVKKPSSVIKEKVISNENHSRKPSEVKKAVLCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSRAREIGSVCSIKYPLPREEFEMHGLLQEGCKLDASAVLYTSVKSARASVVSLHQEEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFLSAGFVWDVSIPRKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLMAVDWAVPKKIYSSDTNAKLALENGQHKVTDEGGSSSENNSDDDVEDTGKQAHQEDDTDQDDSNSTQEEEVPSEVNFDEEAEIAKKVLKNLITSSTEGTSANDDFMSPKKKKESKSNKNVDEADKKSSKELEEVKDVAELEILDRSTASNLKQTEEDLQGTVFISNLPFDCDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADAAVSTATAASGLGILLKGRPLKVLRALDKKSAHDKELKKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKLCIDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKYHSRGVAFVELSEHQHALVALRVLNNNPDTFGPEHRPIVEFAVDNVQTLKLRKTMLQSQQQAAVHGDSKVEENEESGFHTNQKDGKRKVQAQDKPVKDSVLDKDELVSTLPNQNAKRQKGNRKSKKAEGSLSRKENSKALCMKPNNHQDDQNHGGRTSNTVIDSHKTINGKKVHPGLKRRTQNQAEAGENVPRKRSKKNKEPVGKDVVDKLDMLIQQYRSKFSQQGSQGNDGEKKPSKQLRKWFEP 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2303 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 751 829 IPR000504 GO:0003723
Acco03g2303 1049 MobiDBLite consensus disorder prediction 500 516 - -
Acco03g2303 1049 CDD RRM3_RBM28_like 600 680 - -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 942 969 - -
Acco03g2303 1049 SUPERFAMILY RNA-binding domain, RBD 115 355 IPR035979 GO:0003676
Acco03g2303 1049 Gene3D - 750 845 IPR012677 -
Acco03g2303 1049 Gene3D - 532 696 IPR012677 -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 465 518 - -
Acco03g2303 1049 Gene3D - 355 503 IPR012677 -
Acco03g2303 1049 Gene3D - 98 229 IPR012677 -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 191 231 - -
Acco03g2303 1049 SUPERFAMILY RNA-binding domain, RBD 365 451 IPR035979 GO:0003676
Acco03g2303 1049 SMART rrm1_1 600 678 IPR000504 GO:0003723
Acco03g2303 1049 SMART rrm1_1 116 189 IPR000504 GO:0003723
Acco03g2303 1049 SMART rrm1_1 370 443 IPR000504 GO:0003723
Acco03g2303 1049 SMART rrm1_1 752 843 IPR000504 GO:0003723
Acco03g2303 1049 MobiDBLite consensus disorder prediction 482 499 - -
Acco03g2303 1049 PANTHER RNA-BINDING MOTIF PROTEIN 14B 112 1048 - -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 863 1049 - -
Acco03g2303 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 369 447 IPR000504 GO:0003723
Acco03g2303 1049 MobiDBLite consensus disorder prediction 535 568 - -
Acco03g2303 1049 CDD RRM4_RBM28_like 751 848 - -
Acco03g2303 1049 FunFam RNA-binding motif protein 28 750 845 - -
Acco03g2303 1049 SUPERFAMILY RNA-binding domain, RBD 595 685 IPR035979 GO:0003676
Acco03g2303 1049 MobiDBLite consensus disorder prediction 993 1011 - -
Acco03g2303 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Acco03g2303 1049 MobiDBLite consensus disorder prediction 184 231 - -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 1020 1036 - -
Acco03g2303 1049 SUPERFAMILY RNA-binding domain, RBD 742 849 IPR035979 GO:0003676
Acco03g2303 1049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 599 682 IPR000504 GO:0003723
Acco03g2303 1049 CDD RRM1_RBM28_like 116 194 - -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 870 907 - -
Acco03g2303 1049 MobiDBLite consensus disorder prediction 543 568 - -
Acco03g2303 1049 FunFam - 100 227 - -
Acco03g2303 1049 CDD RRM2_RBM28_like 370 446 - -
Acco03g2303 1049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 601 658 IPR000504 GO:0003723
Acco03g2303 1049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 438 IPR000504 GO:0003723
Acco03g2303 1049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2303 Acco-ChrAcco03 48811473 48818673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2303 373 448 Eukaryotic Initiation Factors Gene Family AT3G11400 38.158 1.69e-10 62.0