Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2264 ATGTCGTTCATCGGGACCCAACAAAAATGCAATGCTTGTGATAAAACTGCTCATTTCGTCGATTCAGTATCAGCTGATGGAACCATTTATCATAAGACATGCTTCAAATGCAGTCAGTGTAACGGTGTCCTTGCGAGTAGCACGTACTCATCGGTGGATGGAGTGTTATACTGCAAGCCTCATTTTGAGCAGCTTTTCAAGAGCAGTGGCGGGCTCACCAGGAGATCCCTATCAACTGGAAAGAGTGAGCTGGTGACAGTGGAAGGAGAATTCTACCACAAGTCATGCTTCAGATGTGCGCAAGGAGGCTGTGTTCTGAGCCCATCAAACTACGCAGCTCTTGATGGGTTTTTATACTGTAAGCATCATTTTTCTCAGTTGTTCAAAGAGAAAGGCAGCTACTCTCACGTGTCCCAATCTTCTTCCTTGAAGAAGAACAAGTCTGAATCTGCTGCTTTATCTGATCAAGAGGTTCTGTAG 480 0.45 MSFIGTQQKCNACDKTAHFVDSVSADGTIYHKTCFKCSQCNGVLASSTYSSVDGVLYCKPHFEQLFKSSGGLTRRSLSTGKSELVTVEGEFYHKSCFRCAQGGCVLSPSNYAALDGFLYCKHHFSQLFKEKGSYSHVSQSSSLKKNKSESAALSDQEVL 159
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2264 159 ProSiteProfiles LIM domain profile. 70 130 IPR001781 -
Acco03g2264 159 PANTHER OS06G0237300 PROTEIN 83 151 - -
Acco03g2264 159 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Acco03g2264 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 137 - -
Acco03g2264 159 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Acco03g2264 159 SMART lim_4 9 61 IPR001781 -
Acco03g2264 159 SMART lim_4 74 123 IPR001781 -
Acco03g2264 159 MobiDBLite consensus disorder prediction 139 159 - -
Acco03g2264 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Acco03g2264 159 Gene3D Cysteine Rich Protein 4 73 - -
Acco03g2264 159 Gene3D Cysteine Rich Protein 76 136 - -
Acco03g2264 159 Pfam LIM domain 10 65 IPR001781 -
Acco03g2264 159 Pfam LIM domain 82 127 IPR001781 -
Acco03g2264 159 FunFam LIM domain and actin-binding 1 4 74 - -
Acco03g2264 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco03g2264 Acco-ChrAcco03 48497582 48501441 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Acco03g2264 LIM 2.8e-11 CL0167