Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2263 ATGATCCATAGCCATTTTGGCGTCTTGAACGAACCAGGGGCTCATAAATTAGCTTCATCGATTACTTTCCCCTCTACATTCATGGAGTCACCGGCGGTTGGTTTGCTACCGGCTAAACGCCCTGCAGATGGATTTAATTCAGAGAAACACAAAAGATTAAATGTTGTGGACTATAGCAATCCATATGCAGTTGCAGACTTGATTGATAGCCTGAACAACGGAAAATTTGGTAGTGTCACCAGGGATATAGAGTCCCTTATAGCTCAAAAGATGCAGACATTGAGCCCTATATTTGCAAAAGATCCTGCACTTCTACAGTTTGCGAAAAAGGGAATGAATCGCAACGAAGAAGCTGCTAAGAAAATCATAGATTTGGAGGATAATATCATGACAAAGATTGCTCCAAAAGCATCATCACCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAGGAAACCTTTTCTGCCATTTCTAGAAGTTATTCTGCCAAAACCTGTTGTCCCGTCTGCTACAAAGGACATAGTTGCGTACCATGGTCCCAAAGCACATAATCGTCATGCTGGAAGTCTACATGTAAAATCTGAACCTTTTCTCGATGGCAAAGACAACATTGTAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACAATCCAGAGGCTGATTCAAAGGATGATGGGCTTGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATATTCCAAAGATGCTGCTATTGATTCTCCACATGATGAAGCTGAAAAGGGTGTGGGCGACTGTGATCACTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTCATTGACAAAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTACTAGAACTTACGCAGCTGATTCATGGAATGCCAAAGACAGAGCAATGCCTGAGGTATCAGGACTTAAATTTGGTGAAGATGGTCTGGTGATAACTGAAATCTCTGCTCACCCTAGGCATATGAAGCAAATGAAAGCTCATCAAGTTGAAGGATTTAATTTTCTTGTCCGGAACCTTGCGGGTGACAATCCTGGTGGCTGCATATTGGCCCATGCTCCTGGTTCTGGGAAAACATTCATGATAATTAGTTTCATGCAAAGTTTTTTGGGCAAGTATCCTACTGCTCGACCCCTTGTGGTTCTTCCCAAGGGAATATTGGCCATTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATTCCACTCCTTGATTTTTACTCTGCTAAAGCTGACGGTCGATCTCAGCAACTTGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATCCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGATACTGGCCACGCATCAACGTCTTGCCAAAAGATATTACTTGAGGCTCCTTCTATTCTAATCTTAGATGAGGGACACACACCCAGGAATGACAATACTGACATAGTTCAGTCCCTTAACAAAGTGCAAACTCCTCGAAAAGTTGTGCTGTCTGGGACGTTATATCAAAATCATGTGAAGGAGGTGTTTAACATTTTAAACATTGTGCGTCCAAATTTTCTCCGTTCACAAACGTCTCGACCTATTGTCAGGCGCATTAAGAGTAGAGTACATGTGCCAGGCGTGAAGGATTTCTGTGACTTGGTCGAGAACACTTTGCAGAAGGACCCTGACTTCAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTCCCTGGCCTTGTGGATTTTGCAGTTGTACTCAATCTTTCTCCCCGACAGAAGCAAGAAGTCAATAAATTAAAGCACTTTGCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAGATTAAAGCCCTTGGCAGAAAATTGTGCTGAGAATTCTGCTATATCTGATCTCGTGATGGATGAGAAAATAGAGGGTCTAGATATGGATGACGGGGTAAAATCGAAGTTCTTTCTTAAAATTCTGAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTGTTCAGCCAATATCTCTTGCCTTTAAAGTATTTGGAAAGATTGTCCGTGAAAAGGAAGGGATGGAGTCCAGGGAAAGAGATATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGGCCATGGAGCAGTTCAACAATTCGCCAAATGCAAAAATATTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATTTCTCTGGTTGGTGCATCACGCATAATTATTCTGGATGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACCAAGAAAGTCTATGCATATCGGTTGATAGCTGCTGACTCTCCTGAACAGGAAGACCATGATACTTGTTTCAAGAAGGAATTGATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCGTGATTTTGAAGTGGAGACGGTTGATGTGCAAGAATGTGGTGATGTTTTTCTGCAGAGTCCATTGATAAGGGATGATATAAAAGTTCTGCATAAAAGGCCTGGGCACTCTGGTGAGCTCGATGGACGGGGTTAA 2667 0.4151 MIHSHFGVLNEPGAHKLASSITFPSTFMESPAVGLLPAKRPADGFNSEKHKRLNVVDYSNPYAVADLIDSLNNGKFGSVTRDIESLIAQKMQTLSPIFAKDPALLQFAKKGMNRNEEAAKKIIDLEDNIMTKIAPKASSPVVIIDSDEEDDRDRKPFLPFLEVILPKPVVPSATKDIVAYHGPKAHNRHAGSLHVKSEPFLDGKDNIVDKGAFIGVQEEDNPEADSKDDGLEDIWREMSMAIEYSKDAAIDSPHDEAEKGVGDCDHSFVLKDDLGYVCRVCGVIDKGIETIFEFQYKVKKSTRTYAADSWNAKDRAMPEVSGLKFGEDGLVITEISAHPRHMKQMKAHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPTARPLVVLPKGILAIWKKEFQTWQVEDIPLLDFYSAKADGRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTDTGHASTSCQKILLEAPSILILDEGHTPRNDNTDIVQSLNKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLSPRQKQEVNKLKHFARKFKISSVGSAVYLHPRLKPLAENCAENSAISDLVMDEKIEGLDMDDGVKSKFFLKILSLCESSGEKLLVFSQYLLPLKYLERLSVKRKGWSPGKEIFVISGESSSEQREWAMEQFNNSPNAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVYAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETVDVQECGDVFLQSPLIRDDIKVLHKRPGHSGELDGRG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2263 888 SMART helicmild6 713 801 IPR001650 -
Acco03g2263 888 CDD SF2_C_SNF 672 812 - -
Acco03g2263 888 SMART ultradead3 341 551 IPR014001 -
Acco03g2263 888 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 218 875 IPR044567 GO:0080188
Acco03g2263 888 Coils Coil 108 128 - -
Acco03g2263 888 Gene3D - 319 558 IPR038718 -
Acco03g2263 888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 687 855 IPR001650 -
Acco03g2263 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 839 IPR027417 -
Acco03g2263 888 Pfam SNF2-related domain 364 629 IPR000330 GO:0005524|GO:0140658
Acco03g2263 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 540 IPR027417 -
Acco03g2263 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 359 538 IPR014001 -
Acco03g2263 888 Pfam Helicase conserved C-terminal domain 689 800 IPR001650 -
Acco03g2263 888 Gene3D - 608 854 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2263 Acco-ChrAcco03 48486817 48492375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2263 698 819 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.00e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco03g2263 SNF2_N 2e-20 CL0023