Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2261 ATGTTGCGCTGTCTCAACACGTCCGGCAACCTCACCGGAAACTGCTCCGACATGATGGTGTTGGAAAGGCAAAGGATGAGGATGAAATGGCAACAAGAACAACAATATCACCAAAACCAGAACTTTTATGGTGATTCTGCGCTCGGTGAGGTCGTCGCTAAGTCCATCAAGCCCGAAATGGGTCAACCCACCTTTCCCAGTTTCGGGTTTGGGTCTCATGGGTTTGAATCAAGTTCTGCAATTTCAACGACTTCCATGGCAGCCGTTGAAGAAACCAGAAACAGAGACTCTGTTTCTGAGACGGAAAAAATCAGCTCTGCAAGTGGGAAACAGAGCTTGAAGAAGAGAAAATCCGATAAGCTTCATAGCTCCAAGGTTGTTGCAGAAAGTGAAAAGAAAGAGAAGAAGATGAAAGGAAATGGAGAGGAAGGAGAATCCAGAATAGCAGAGCAAAATAGCAGCAAAGAAACATGTGGAGGTACCTCAAAGGGAAATTCGAAGGTGTCTAAGGTTCAAAAGACGGATTACATCCATGTCCGAGCGCGTCGTGGCCAAGCCACTGATAGCCATAGCCTAGCAGAAAGAGTTAGAAGGGAAAAGATCAGCGAGAGAATGAAGTATTTGCAGGATTTAGTACCAGGTTGTAACAAGATCGCAGGAAAAGCTGGAATGCTGGATGAGATCATCAACTATGTTCAATCTCTTCAACGCCAAGTAGAGTTCTTGTCAATGAAATTAGCTACTGTAAACCCAGCACTTGAGTTCAACCTGGATGATGTCTTCTCCAAAGAGGTTTTTAGTACTTGTGGTCCCAGTTTTGCAACATTTGGGATGGGATCAGACATGAACGATCCAGCATATCTTCAGTTCAATAATAACTCAGGCCAACAGTTTCCTCCTTCAATTCCAGAAACGTTTCTTGACTCCTGCTGTTTCCCTCAAATTATACCATCCTCTACTTACGAATCTGATCTTCATAATCTGATGAATGTGGGTTTTGATCAACCAAGAGCATCAGCAGCAGCAACTTTTCTTTCTCAACCATTCACAGGTGTAGTTGAAGCTAGCCACCATCCAAAGATGGAGATGCAGATGTAG 1098 0.4399 MLRCLNTSGNLTGNCSDMMVLERQRMRMKWQQEQQYHQNQNFYGDSALGEVVAKSIKPEMGQPTFPSFGFGSHGFESSSAISTTSMAAVEETRNRDSVSETEKISSASGKQSLKKRKSDKLHSSKVVAESEKKEKKMKGNGEEGESRIAEQNSSKETCGGTSKGNSKVSKVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPALEFNLDDVFSKEVFSTCGPSFATFGMGSDMNDPAYLQFNNNSGQQFPPSIPETFLDSCCFPQIIPSSTYESDLHNLMNVGFDQPRASAAATFLSQPFTGVVEASHHPKMEMQM 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2261 365 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 85 289 IPR024097 GO:0006355
Acco03g2261 365 MobiDBLite consensus disorder prediction 86 171 - -
Acco03g2261 365 Gene3D - 182 256 IPR036638 GO:0046983
Acco03g2261 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 253 IPR036638 GO:0046983
Acco03g2261 365 MobiDBLite consensus disorder prediction 151 171 - -
Acco03g2261 365 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Acco03g2261 365 MobiDBLite consensus disorder prediction 122 150 - -
Acco03g2261 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Acco03g2261 365 SMART finulus 191 241 IPR011598 GO:0046983
Acco03g2261 365 FunFam Basic helix-loop-helix transcription factor 182 254 - -
Acco03g2261 365 CDD bHLH_AtBPE_like 175 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2261 Acco-ChrAcco03 48472862 48474968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2261 9 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 45.230 1.40e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco03g2261 HLH 3.2e-06 No_clan