Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2250 ATGGCCTCCGACGACTCTCCCGGTCACGGTCTTACGCAGCTCTCTAACAAAACTCCATTTCTCGGCTTAAAGCTCTACTTCGTGATCGGCATTTTCCTTCTAATCGTACTGGCATTTTTGCTTCTGATCTTTCTCTGCGTTCGCCGGAGTCGAATCTCGACGAAGCGTAAATTGCGCGTGAAGCACAGTTCCGGGACGATTCCCTTGGTCTCCAAGGAGATCGTGGAAGTCAAAGCCCTGGATCTCGAGCAGAATTATGAGCAAGCTGAGGTTAAAATTGGGGATGAGGATCCGAAGAAGGAGAAGATTGAGGTTGAGGTTGAGAGAAGAGGGAAGAAGACGAGCGACGAGAGTGATGTTTCCGGTAGGAGCCGCAGTGACGTGTCGGTGGACGCACCGAACATAGGGTGGGGAAGATGGTATAACCTGAGGGAGCTGGAGGATGCTACGCGTGGGTTCGCGGAAGAAAGTGTGATCGGTGAAGGAGGGTATGGTATTGTGTACAAAGGTGTTCTTGATGATGGGTCGGTGGTGGCTGTGAAGAATCTTCTGAACAACAAGGGTCAAGCAGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCACAAGAATTTGGTGGGTTTAGTTGGGTATTGCGCAGAAGGTCCTCAAAGGATGCTTGTTTATGAGTATGTTGATAATGGAAATTTGGAGCAGTGGTTGCATGGTGATGTTGGGCCTGTTAGTCCCTTGACATGGGATATACGGATGAAAATTGCCATTGGGACAGCAAAAGGGCTGGCCTATCTGCATGAAGGGTTAGAACCCAAAGTGGTGCACCGAGATATAAAATCAAGTAACATTCTTTTGGACAGAAAGTGGAATGCTAAAGTATCAGACTTTGGACTAGCCAAGCTATTAGGCTCAGAGAAGACCTATGTCACCACACGTGTAATGGGGACATTTGGATACGTTTCACCTGAGTATGCAAGCACAGGAATGCTTAATGAGGGAAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATTACAGGAAGAAGTCCCATTGATTATTCTAGACCACCTGGAGAGATGAATTTGACTGATTGGTTCAAGGGAATGGTAGCAAGTCGTCGTGGTGAAGAGCTGGTAGATCCTTTGATTGAGGTCCAGCCCTCTCCAAGATCTTTGAAACGAGCTTTGCTGGTGTGCCTGCGCTGTATTGATTTGGATGTTAGTAAACGACCAAAGATGGGTCAAATCGTTCATATGCTTGAAGCAGATGATTTCCCCTTTCGTTCTGAACTTCGTACAATAAGAGAGAAAGAGCCCGTTCCTCCTTCGCATTCCCCAATTCCTCGGAAAGTTCAATATCCCCCTAAGAACGTGGACTCCATAGAACAGTCAAGATGGAGATGA 1416 0.4696 MASDDSPGHGLTQLSNKTPFLGLKLYFVIGIFLLIVLAFLLLIFLCVRRSRISTKRKLRVKHSSGTIPLVSKEIVEVKALDLEQNYEQAEVKIGDEDPKKEKIEVEVERRGKKTSDESDVSGRSRSDVSVDAPNIGWGRWYNLRELEDATRGFAEESVIGEGGYGIVYKGVLDDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLGSEKTYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLTDWFKGMVASRRGEELVDPLIEVQPSPRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSELRTIREKEPVPPSHSPIPRKVQYPPKNVDSIEQSRWR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2250 471 SMART serkin_6 153 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2250 471 SUPERFAMILY Protein kinase-like (PK-like) 127 425 IPR011009 -
Acco03g2250 471 Gene3D Phosphorylase Kinase; domain 1 123 228 - -
Acco03g2250 471 CDD STKc_IRAK 159 425 - -
Acco03g2250 471 Gene3D Transferase(Phosphotransferase) domain 1 229 435 - -
Acco03g2250 471 FunFam Probable serine/threonine-protein kinase At1g01540 133 228 - -
Acco03g2250 471 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Acco03g2250 471 Coils Coil 72 92 - -
Acco03g2250 471 Pfam Protein kinase domain 154 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2250 471 MobiDBLite consensus disorder prediction 102 124 - -
Acco03g2250 471 MobiDBLite consensus disorder prediction 440 471 - -
Acco03g2250 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Acco03g2250 471 FunFam Putative receptor-like serine/threonine-protein kinase 229 439 - -
Acco03g2250 471 ProSiteProfiles Protein kinase domain profile. 153 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2250 471 PANTHER OS01G0323000 PROTEIN 12 441 - -
Acco03g2250 471 MobiDBLite consensus disorder prediction 102 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2250 Acco-ChrAcco03 48369392 48372537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2250 27 427 Trihelix Transcription Factor Family AT1G70460 42.365 5.14e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Acco03g2250 Pkinase 1.7e-46 CL0016