Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2247 ATGTCTGTTGCGGAGCTCAAGGAGCGTCACTTGGCGGCTACGGAGACGGTGAACACTCTCAGGGAGCGGTTGAAGCAGCGACGACTTTCTTTACTCGATACCGATGTTGCTTCATACGCGAGGAATCAAGGTAGGACTCCTGTTAGCTTTGGTCCTACAGATCTCGTTTGCTGTAGAAATTTACAGGGTCATATGGGAAAGGTATATTCATTGGATTGGGCATCTGAAAAGAATAGAATTGTTAGTGCATCCCAAGATGGACGACTTATAGTATGGAATGCTCTTACTAGCCAGAAAACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACCTGTGCTTTCTCACCAACTGGTCAGTCTGTTGCATGCGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTGAATTCCCCTACTGACAGGGATGGTAATCTGCCTGTTTCACGGACGCTTAGTGGACATAAGGGTTATGTCTCCTCTTGTCAGTTTGTTCCAGATGATGACACTCACCTTATTACCAGTTCTGGTGATCAGACATGTGTTTTGTGGGATATTACTACAGGCCTTAGAACATCAGTTTTTGGAGGTGAATTTCAGTCCGGACATACTGCAGATGTATCAAGCATTTCTATCAATGGATCCAATTCAAAGTTGTTTGTATCCGGTTCTTGTGATGGAACTGCCCGATTGTGGGATACACGTGTAGCAAGCCGAGCTGTGCAGACATTTCATGGGCATGAGGGAGAAGTTTGTGCTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGTTCTGATGATGGAACTTGCCGATTATTCGACACTAGGACTGGTCACCAACTACAAAAATACTATCAACAAGTTGACACTGACAGTGACACACCACATGTGACCTCCATTGCATTCTCCATATCAGGAAGGCTTCTTTTTGCTGGATACACGAATGGTGATTGCTGTGTTTGGGACACTTTATTAGCAAAGGTGGTATTGAATTTAGGATCTCTTCAGAACTCTCATGAGGGCAGGATTAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGCTGGGACTCAAACTTGAAGATTTGGGCGTTTGGAGGGCATAGAAAGGCGGTGTGA 1137 0.4477 MSVAELKERHLAATETVNTLRERLKQRRLSLLDTDVASYARNQGRTPVSFGPTDLVCCRNLQGHMGKVYSLDWASEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRDGNLPVSRTLSGHKGYVSSCQFVPDDDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVSSISINGSNSKLFVSGSCDGTARLWDTRVASRAVQTFHGHEGEVCAVKFFPDGNRFGTGSDDGTCRLFDTRTGHQLQKYYQQVDTDSDTPHVTSIAFSISGRLLFAGYTNGDCCVWDTLLAKVVLNLGSLQNSHEGRISCLGLSADGSALCTGSWDSNLKIWAFGGHRKAV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Acco03g2247 378 Gene3D - 3 370 IPR015943 GO:0005515
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 369 IPR001680 GO:0005515
Acco03g2247 378 CDD WD40 57 370 - -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 378 - -
Acco03g2247 378 SMART WD40_4 330 370 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 96 135 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 145 185 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 54 93 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 192 233 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 237 276 IPR001680 GO:0005515
Acco03g2247 378 SMART WD40_4 279 324 IPR001680 GO:0005515
Acco03g2247 378 PIRSF GNBP_B 1 372 - -
Acco03g2247 378 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Acco03g2247 378 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Acco03g2247 378 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Acco03g2247 378 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Acco03g2247 378 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Acco03g2247 378 Pfam WD domain, G-beta repeat 298 324 IPR001680 GO:0005515
Acco03g2247 378 Pfam WD domain, G-beta repeat 340 369 IPR001680 GO:0005515
Acco03g2247 378 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Acco03g2247 378 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Acco03g2247 378 SUPERFAMILY WD40 repeat-like 54 369 IPR036322 GO:0005515
Acco03g2247 378 Coils Coil 3 23 - -
Acco03g2247 378 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Acco03g2247 378 FunFam Guanine nucleotide-binding protein subunit beta 2 370 - -
Acco03g2247 378 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Acco03g2247 378 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Acco03g2247 378 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Acco03g2247 378 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Acco03g2247 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Acco03g2247 378 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 370 IPR016346 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2247 Acco-ChrAcco03 48341215 48344577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2247 92 371 U-box Gene Family AT1G04510 24.699 1.72e-13 69.7