Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2210 ATGACCAACCAGTCACACGCTCACACGGACCTCACAAGTGCAACGACCATTGTCAGACTTCTTACGTTTCAGAGCAGTGATGAAGATTACCAATACTCTGATCAGGAGTACTCGGACGAATGCTTTTATGAGGTGCCCGATTCTAAATTGTTTGCTGCCACTGCCAAGGGTCCCACAATTAAGGTTATTACGAAGGAAACACTTCCAATCGCACAGAAAGAGGATTTGTGCACAATAAAGGAATTGCTATCAGTGGAAGAGCATCAGGCACGTAGACTTCTTATGTTTCATAGGTGGGATAAGGAGGAATTAGCTAGGAAGTTCGGGGAAAAGGGGAAGACATCACTCTTCGCTGAAGCCGGCGTTAGCGAAAAAGTATGCCTTGATTCGAACCCATTGATTGCTTCTTCAATGATGTGTAAAATCTGCTTCAAGGTTGTTTCCGGTAATGAAACCACAAGAATGGACTGTGGTCACTGTTTTTGCAACGATTGTTGGACTAGACATTTCATTGCCAAGATAAATGAAGGTCAAAGTAAACACATTAAGTGCATGGCAGACGGATGCAAACATTATTGCAATGAGGATGTTGTAAAAACACAACTGAGGGAAGAGGATATGGCGAAATTCGATCGTTTTCTTCTTGAGTCTTACATTGAAGACAACAGAAGAGCAAAGTGGTGCCCCAGCACTCCTCACTGTGGAAATGCAATCTGTGTTGAGGATGATGATGTATTATATGAGGTGGAATGTTTGTGTGGCTTTCAATTCTGTTTTAGTTGTTTATCTGAACCACATTCCCCTTGTTCGTGTTTGATGAGGGAACGTTGGGCTGAAAAGTCTAATGGTGCCAGTTGGTTAAAACATAACACGCAACCTTGTCCCAAATGTGACAAATTAGTGTACAAGAGTGAAGGCTGTGACTCGGTTACCTGCATTTGTGGCGCAGCATTTAGGTGGCGGGCCGGTGGACGAGAGGAAATGGCTGAAGAGGCGAATCAGGATGAAAGCCGATTTACACGATATTATGAAGCTCATAAGAACTCCTTAGATACGGGATTTAGATTTACAGAATCTATGGCAAATATGGCTCCTTACCTAGGAAACAATTTCTGGGTAAATGATGCACTTTCCACACTTGTCAGGTCTCGGCGAGTCTTATCATATTCATATCCATTTGTATCCTATTTGTTTAATTATGAAATGTTAGACGAGGAAACGAGAAGAAAACTCAATTTATTTGAGTATCATCAGGAGCTGCTTGAGAAAAATATTGATAAGCTCTCTAAAAGTTTGGATGAGCTCTTTGAAAGTGACGAGGTTTTGGATAAAAAGACACAGGTTATCGGTTTGTCAGCAGTTATTGACAAGTTTTGTGAGCATGTTGTGTATGAGTTCATCCGGGAAGACTTGTTGCCTTTTCTACCTCACAGCCACAAGATAGCTCCATATCAGTTATTGAGGTCGAGGCCTCAATAA 1479 0.4185 MTNQSHAHTDLTSATTIVRLLTFQSSDEDYQYSDQEYSDECFYEVPDSKLFAATAKGPTIKVITKETLPIAQKEDLCTIKELLSVEEHQARRLLMFHRWDKEELARKFGEKGKTSLFAEAGVSEKVCLDSNPLIASSMMCKICFKVVSGNETTRMDCGHCFCNDCWTRHFIAKINEGQSKHIKCMADGCKHYCNEDVVKTQLREEDMAKFDRFLLESYIEDNRRAKWCPSTPHCGNAICVEDDDVLYEVECLCGFQFCFSCLSEPHSPCSCLMRERWAEKSNGASWLKHNTQPCPKCDKLVYKSEGCDSVTCICGAAFRWRAGGREEMAEEANQDESRFTRYYEAHKNSLDTGFRFTESMANMAPYLGNNFWVNDALSTLVRSRRVLSYSYPFVSYLFNYEMLDEETRRKLNLFEYHQELLEKNIDKLSKSLDELFESDEVLDKKTQVIGLSAVIDKFCEHVVYEFIREDLLPFLPHSHKIAPYQLLRSRPQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2210 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Acco03g2210 492 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 73 359 IPR031127 GO:0004842|GO:0016567
Acco03g2210 492 FunFam RBR-type E3 ubiquitin transferase 134 222 - -
Acco03g2210 492 CDD RING-HC_RBR_TRIAD1 138 190 - -
Acco03g2210 492 SMART ibrneu5 208 271 IPR002867 GO:0008270
Acco03g2210 492 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Acco03g2210 492 SUPERFAMILY RING/U-box 286 321 - -
Acco03g2210 492 SUPERFAMILY RING/U-box 209 277 - -
Acco03g2210 492 ProSiteProfiles Zinc finger RING-type profile. 140 187 IPR001841 -
Acco03g2210 492 Coils Coil 418 438 - -
Acco03g2210 492 SUPERFAMILY RING/U-box 137 220 - -
Acco03g2210 492 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270
Acco03g2210 492 Gene3D - 267 323 - -
Acco03g2210 492 Gene3D - 324 470 - -
Acco03g2210 492 CDD BRcat_RBR_ANKIB1 215 280 - -
Acco03g2210 492 Pfam Ariadne domain 325 485 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2210 Acco-ChrAcco03 48024674 48028476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2210 81 485 ARIADNE family AT2G16090 47.588 3.79e-117 351