Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2209 ATGGCGGAGTATCAGAGCAGTGACGAAGATTCTCAATACTCCGATCAGGAGTACTTGGACGAATGCTTGTATGAGGAGCCCGATTCTGAATTGGTCGCTGCCACTGCCAAAGGTCCCACAATTAAGGTTATTACAAAGGAAGCACTTTCAACCGCACAGGCTGAGGATTTGTCCACAATAATGAATTTGCTATTAGTGGAAAGGCATCAAGCACGTAGACTTCTTATTTTTCATGGGTGGGATAAGGAGAAATTAGCTAGGAAGTTCGTGGAAAAGGGGAAGACATCACTCTTCGCTGAAGCTGGTGTTAGTGAAAAAGTACGCCGTGATTCAGACTCATCGATTGCTTCTTCAATGACATGTGAAATCTGCTTCGAGGTTGTTTCCTGTAATGAAACCACAAGAATGGACTGTGGTCACTGTTTTTGCAACAATTGTTGGACTAGATATTTCATTGTCAAGATAAATGAAGGTCAGAGTAAACACATTGAATGCATGGCACACAGATGCAAATATTATTGCAATGAGGATATTGTAAAAACACTACTGAGGGAAGAGAACCGTGATATGGCAGAGAAATTCAAACGTTTTCTTCTTGAGTCCTACATTGAAGACAACAGAAGAGCAAAGTGGTGTCCCAGCACTCCTCACTGTGGGAATGCAATCTGTGTTGAGGATGATGTATTGTATGAGGTGGAATGTTCATGTGGCTTTCAATTCTGTTTTAATTGTTTATCTGAACCACATTCCCCTTGTTCGTGTTTGATGAGGGAACGTTGGGCTGAAAAGTCTTATGGTGCCAATTGGTTAAAACACAACACCCAACCTTGTCCAAACTGCGACAGATTAGTGTACAAGAGTGAAGGTTGTGACTCGGTTACCTGCATTTGTGGCCCAGCATTTAGGTGGTGGGCCGGTGGACGAGAGGAGAAGGCTGAAGAGGCGAATCAGGATGAAAACCGATTTACACGATATCATGAAGCTCATATGAACTCCTTAGATACGGGATTTAGATTTACAGAATCTATGGCAAATATGGCTCCTTACCCAGGAGACATTTTTTGGGTAAATGATGCACTTTCCACACTTATCAGGTCTCGGCGAGTCCTATCATATTCATATCCATTTGTATTCTATTTGTTTAATGAACTGTTAGACTTGGAAACGAGAACAAAACTCAATTTATTTGAGTATCATCAAGAGCAGCTTGCGAAAAAACTTGAGAAGCTCTCTAAAATTTTGGGTGAGCTCTTTGAAAGTGACAAGGTTTTCGATATAAAGAATCAGGTTATCAATTTGGCAGCAGTTATTGACAAGTTTTGTGAGCATGTGTATGAGTTCATCCGGGAAGACTTGTTGCCTTTTCTCCCTCACAGCCACAAGATAGCGCCATATCAGTTATTGAGGCCGAGGCCTCAATAA 1422 0.4163 MAEYQSSDEDSQYSDQEYLDECLYEEPDSELVAATAKGPTIKVITKEALSTAQAEDLSTIMNLLLVERHQARRLLIFHGWDKEKLARKFVEKGKTSLFAEAGVSEKVRRDSDSSIASSMTCEICFEVVSCNETTRMDCGHCFCNNCWTRYFIVKINEGQSKHIECMAHRCKYYCNEDIVKTLLREENRDMAEKFKRFLLESYIEDNRRAKWCPSTPHCGNAICVEDDVLYEVECSCGFQFCFNCLSEPHSPCSCLMRERWAEKSYGANWLKHNTQPCPNCDRLVYKSEGCDSVTCICGPAFRWWAGGREEKAEEANQDENRFTRYHEAHMNSLDTGFRFTESMANMAPYPGDIFWVNDALSTLIRSRRVLSYSYPFVFYLFNELLDLETRTKLNLFEYHQEQLAKKLEKLSKILGELFESDKVFDIKNQVINLAAVIDKFCEHVYEFIREDLLPFLPHSHKIAPYQLLRPRPQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2209 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 205 IPR013083 -
Acco03g2209 473 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
Acco03g2209 473 SMART ibrneu5 192 254 IPR002867 GO:0008270
Acco03g2209 473 SUPERFAMILY RING/U-box 192 260 - -
Acco03g2209 473 CDD RING-HC_RBR_TRIAD1 119 171 - -
Acco03g2209 473 SUPERFAMILY RING/U-box 118 204 - -
Acco03g2209 473 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 374 IPR031127 GO:0004842|GO:0016567
Acco03g2209 473 CDD BRcat_RBR_ANKIB1 199 263 - -
Acco03g2209 473 Pfam Ariadne domain 308 466 IPR045840 -
Acco03g2209 473 SUPERFAMILY RING/U-box 269 307 - -
Acco03g2209 473 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Acco03g2209 473 ProSiteProfiles TRIAD supradomain profile. 117 332 IPR044066 -
Acco03g2209 473 Gene3D - 305 453 - -
Acco03g2209 473 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2209 Acco-ChrAcco03 48020388 48022894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2209 61 466 ARIADNE family AT2G16090 47.692 3.37e-128 379