Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2194 ATGCCGCGACCTTGCTTTCACAAGCTTATTTGTCCCTCCACGCTCCAATCTCGGCAGCTGATTATTCCAGATAATTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCTACCCTTACTGTTCCAGATGGCAGTGTCTGGCGAGTAGGATTAAAAAGGTTGGGCAACAAATTTTGTCTCTTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGTGTTGGTTACTTGCTTGTATTCAGATATGAAGGGAAATCATCATTCAATGTTCATATTTTCAATTTGGCTACTTGTGAGATAAATTACCAATCAAACACACATAGCATTAATGAAGGGACTTTCTTTCCTAACCAACGTCTTAATTTTGATGATATTGAAGATGAAGAAGACTCCATTGAATTCCTAGATTCATCACCTTCATCTGTTACTCCTGGCGCATTGCAGAACAAGGCTTTTCCTGGAACTCCAGCATTGCAGAATTTGTTCCATGGGTCTAAATTTAACTCCATAAACTGGGGAGACGGGGGGAATTCCCTTTCTTCTAAAGGTGCCAATTCTCAAGACAATCAATCAAGCAGAAATATAGGTGTTCAGTTTAATGCAGTTGAGTTCAAAAAGTCTACTGAAGAGCTAAAATTGCGTTTCGCTAATGAGGAAATGCAAAGAGTTAAGAAAACTATAAGAAAGAAGCGGAAAACGGAACCAAATGGACAAGAACCCTCAGCTCAACATGAAGAAGAGGGGGAAATGATGCGCTATAGATTTTATGAAAGTGCTTCTGCTAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGCTAATCCGTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCATCTTGTTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTCATTAAACTCCAAATCTCTGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGGAGAGCAAAGTTAAGCCAAGGGTGGTTTGAATTTTCACTGGAAAATAATTTAGGCGAAGGGGATGTCTGTGTTTTTGAGCTTCTTAGAATGAAAGAAGTAGTGTTGAAAGTTACTATATTTCGTGTCACTGAGGATGCAGGATTGATGAGCCCTCCTCCTATACATCAACACCAAAGTGTCAGCCCAACAAAACTATTGAATACTCCTATGCAACAAACCTTGAGGCCAGCGAAACTGATTAGAAACTAG 1275 0.4055 MPRPCFHKLICPSTLQSRQLIIPDNFLRKFGGELSTVATLTVPDGSVWRVGLKRLGNKFCLFDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATCEINYQSNTHSINEGTFFPNQRLNFDDIEDEEDSIEFLDSSPSSVTPGALQNKAFPGTPALQNLFHGSKFNSINWGDGGNSLSSKGANSQDNQSSRNIGVQFNAVEFKKSTEELKLRFANEEMQRVKKTIRKKRKTEPNGQEPSAQHEEEGEMMRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLKVTIFRVTEDAGLMSPPPIHQHQSVSPTKLLNTPMQQTLRPAKLIRN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2194 424 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
Acco03g2194 424 Pfam B3 DNA binding domain 293 384 IPR003340 GO:0003677
Acco03g2194 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Acco03g2194 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Acco03g2194 424 Gene3D - 1 100 IPR015300 -
Acco03g2194 424 CDD B3_DNA 4 96 IPR003340 GO:0003677
Acco03g2194 424 MobiDBLite consensus disorder prediction 234 249 - -
Acco03g2194 424 SMART B3_2 290 385 IPR003340 GO:0003677
Acco03g2194 424 SMART B3_2 6 98 IPR003340 GO:0003677
Acco03g2194 424 MobiDBLite consensus disorder prediction 228 249 - -
Acco03g2194 424 PANTHER B3 DOMAIN-CONTAINING 3 373 - -
Acco03g2194 424 ProSiteProfiles B3 DNA-binding domain profile. 290 385 IPR003340 GO:0003677
Acco03g2194 424 Coils Coil 208 235 - -
Acco03g2194 424 Gene3D - 267 387 IPR015300 -
Acco03g2194 424 CDD B3_DNA 288 383 IPR003340 GO:0003677
Acco03g2194 424 SUPERFAMILY DNA-binding pseudobarrel domain 283 384 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2194 Acco-ChrAcco03 47930082 47934028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2194 1 389 B3 DNA Binding Superfamily AT3G18990 52.393 8.56e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco03g2194 B3 2.9e-16 CL0405