Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2163 ATGTCACCGACGGCAAGACGACGTCGTAACCGAGGCTTAGGTCTAACCCCAGATCCAACCTCCTTCCATCCCTCCATATATAAACCCACCCCAATCTTCAACTTCTTCCCCTTTCCACCACTCTGTCTCTCTCTCTGTTCGTTACCTGGTCTCGGTCTCCGTCCCTGCGTGGACCAGGTCCTCTCCTTCTCGCTTTCTCTCAACTCTCAACTCTTAATTTCAACTCCACAACTTCCAGAGTCGGAGAGAGGAAACAAGGTACAGAGAAGCTCCATAGAAGCCATGGCTCAGCCCACCAACGCGGCGGATCTGAATCAGCACCAGCATCAACAGCAGTGGACAACGCAGCAACCGCATCAGTATCAGCAGCAATGGATGGCTATGCAGTACCCTGCTACTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAACATTATATGCCTTACGTCCACCATTATATGCCCCCTCACCAGCAGCAGCAGCAGCACAAGCCGCAGCCGTATCAGCAGCAGCAGCACAAACAAGGGTGGTCGTCCGATGAGGTCCGGACGATATGGCTCGGTGACCTTCACCATTGGATGGATGAGAACTATCTTCATAACTGTTTTGCTCATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAGGGGTTTGGATTTGTTGAGTTTTATTCACGTGCTACAGCTGAGAAAGTTTTGAACAACTACAATGGTGCTATGATGCCAAATACCGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCAGCGCAGGTGATAGGAGATCTGACGCTAGTTCTGATCTGTCAATATTTGTCGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTGCATGAAACCTTTGCTAGCAAATTTACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAACACTGGGCGGTCAAAAGGTTATGGTTTTGTACGGTTTGGTGATGAAACTGAGAGGTCTAGGGCTATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTACCATGGATATCAACAACAATATTCTTCCCAAGCTGTAGTATTAACTAATGGACACTCATTGAACGGTGCCACCACACAAGGTTCCCAGCCTGAAGGGGAATCAAATAACACAACTATTTTTGTTGGAGGCCTCGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCAGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTGCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAGCGGGACAGTAATTGGGAAGCAAACCGTACGGCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGTTACTATGGAAGCCAGTGGCCTGCCGTGCGACAAAACCAGGATCTTAGTATGAACGTTGCTGCTGCTGCAGTTCAAGGGACATCTTGA 1536 0.4746 MSPTARRRRNRGLGLTPDPTSFHPSIYKPTPIFNFFPFPPLCLSLCSLPGLGLRPCVDQVLSFSLSLNSQLLISTPQLPESERGNKVQRSSIEAMAQPTNAADLNQHQHQQQWTTQQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQQQHKPQPYQQQQHKQGWSSDEVRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGFGFVEFYSRATAEKVLNNYNGAMMPNTDQPFRLNWATFSAGDRRSDASSDLSIFVGDLAVDVTDAMLHETFASKFTSVKGAKVVIDSNTGRSKGYGFVRFGDETERSRAMTEMNGCYCSNRPMRIGVATPKKYHGYQQQYSSQAVVLTNGHSLNGATTQGSQPEGESNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALSGTVIGKQTVRLSWGRSPGNKHWRTDSNGGYYGSQWPAVRQNQDLSMNVAAAAVQGTS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2163 511 FunFam Polyadenylate-binding protein RBP47B 267 369 - -
Acco03g2163 511 SMART rrm1_1 280 354 IPR000504 GO:0003723
Acco03g2163 511 SMART rrm1_1 399 466 IPR000504 GO:0003723
Acco03g2163 511 SMART rrm1_1 187 262 IPR000504 GO:0003723
Acco03g2163 511 FunFam Polyadenylate-binding protein RBP47 379 493 - -
Acco03g2163 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 266 IPR000504 GO:0003723
Acco03g2163 511 MobiDBLite consensus disorder prediction 1 20 - -
Acco03g2163 511 Gene3D - 185 265 IPR012677 -
Acco03g2163 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 398 470 IPR000504 GO:0003723
Acco03g2163 511 Gene3D - 267 372 IPR012677 -
Acco03g2163 511 SUPERFAMILY RNA-binding domain, RBD 159 268 IPR035979 GO:0003676
Acco03g2163 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 358 IPR000504 GO:0003723
Acco03g2163 511 FunFam Polyadenylate-binding protein RBP47B 185 265 - -
Acco03g2163 511 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 165 474 - -
Acco03g2163 511 CDD RRM2_SECp43_like 278 357 - -
Acco03g2163 511 SUPERFAMILY RNA-binding domain, RBD 267 374 IPR035979 GO:0003676
Acco03g2163 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Acco03g2163 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 350 IPR000504 GO:0003723
Acco03g2163 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 463 IPR000504 GO:0003723
Acco03g2163 511 Gene3D - 380 497 IPR012677 -
Acco03g2163 511 MobiDBLite consensus disorder prediction 159 178 - -
Acco03g2163 511 CDD RRM1_SECp43_like 187 267 - -
Acco03g2163 511 SUPERFAMILY RNA-binding domain, RBD 388 487 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2163 Acco-ChrAcco03 47610820 47615386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2163 188 477 Eukaryotic Initiation Factors Gene Family AT4G34110 28.620 2.20e-26 111