Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2136 ATGGTTTCGTCACCTACAACTCCAAACAGCTATCGTTCTGTCAGAGAAGGAAGTCAAGAATCCCACCGTCTTTCTTTGTCTTCAGACTCTTTAGAACAGAAGGGGAAAAATATGGCTAAATCAGCTGCCAACATGCTTCCCTGTCCTTTGATCCAGGAGCCTCGTTTCTCCTTGGATGGCCCAGTGGCTATTCTGTGGGATATTGAAAATTGTCCAGTTCCAAGTGATGTGCGCCCTGAAGATGTAGCTAATAATATAAGAATGGCTTTGAGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGAGATTTCAATGCCTTCCCCAGGCGAGTCAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAGGATGCTGCAGATAAGGCTATCTTGGTGGACATGTTCTTATTTGCCCTTGACAACCCTCCCCCTTCCTCCATCATGCTGATATCCGGGGATGTTGATTTTGCTCCAGCACTTCACATTCTTGGTCAACGTGGTTATACAGTTATTCTTGTCATCCCAGCTAACGTGGGTGTTTCATCTGCCCTAAGTAATGCAGGTAAATTTGTTTGGGACTGGCCTAGTGTGGCTCATGGTGAAGGCTTTGTGCCTCCCTTGAAGGCTTTAGTTCCACCTCGTATGAATCCAGCTGAGGTTGCTGGATATCTGATGGGGATCCATATCAATGACAATACTCTTGGACAAAATGAGGAAGAAGCAATAGTTTACAGAGGAATGTCACAGAGCTATTATAACTCTAGGGATTTCTCGGTTGCTTCACTGTCTCTTTCTGAATACAACAATGGCACGTTAAATGGAGGACCCTCTCTTCCTACAACTTTTAGGTCACACAGCCTTCCTACTGGATTTAGTGTTACTTCAGGAGGACCCATTTCTTCCACTGACCAAAATGAAATCCCATTGGGGGTACAACCTGGGGATTTAAATGGTCTCAAGGGCCAGTTGGTAAAGTTGCTTGAACTTTCTGGAGGATCCCTGCCTCTGGCTCGGGTTCCAGCTGAGTACCATAAATGTTTTGGGAGGCCTCTTTACGTGTCAGAATATGGAGCATTCAAGTTAGTAATTCTTTTCAAGAAGATGGGTGATTCCATGGCTGTAGAAGGGAAGGGGAATCGGAAGTTTGTGTATCTTCGGAATCGGAAAGCAAGCCCAAGTGCACCTCCTTTGACTCTAGCACAGAAAGATAAGAAAGGAAGGGGGGCTCAGGAAGAGAATGTGGATATTGTCACTGGTGGATGCTCTTCAGATGAGTTGTCAGATGAAGATAGAATTGTCATTGAAGAGCAGGATGAGAGAAGTGGAATAGGAAAGAGCCATCAGGGAAGAGCATCCAGATGTGAAATTGGTGAAAATCTTGAGCAGTTCAAGTATGAGCTACAGGAGATTCTAGTCAGCTATTCTTGCGGAATATATCTAGGTTGTTTTGAAGCAATATACCAGCAACGGTACAAGAAACAACTGGAATATCAGAAATTTGGTGTGGATAAGTTGGAGGATTTGCTTGAGAAAGTGAGTGATGTGGTGGAATTACACGAAGAACCAGTAACCAGCAGGAAGTTCCTGTCTGCTGTGGGTGGGTAG 1641 0.4467 MVSSPTTPNSYRSVREGSQESHRLSLSSDSLEQKGKNMAKSAANMLPCPLIQEPRFSLDGPVAILWDIENCPVPSDVRPEDVANNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRVREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALSNAGKFVWDWPSVAHGEGFVPPLKALVPPRMNPAEVAGYLMGIHINDNTLGQNEEEAIVYRGMSQSYYNSRDFSVASLSLSEYNNGTLNGGPSLPTTFRSHSLPTGFSVTSGGPISSTDQNEIPLGVQPGDLNGLKGQLVKLLELSGGSLPLARVPAEYHKCFGRPLYVSEYGAFKLVILFKKMGDSMAVEGKGNRKFVYLRNRKASPSAPPLTLAQKDKKGRGAQEENVDIVTGGCSSDELSDEDRIVIEEQDERSGIGKSHQGRASRCEIGENLEQFKYELQEILVSYSCGIYLGCFEAIYQQRYKKQLEYQKFGVDKLEDLLEKVSDVVELHEEPVTSRKFLSAVGG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2136 546 ProSiteProfiles OST-type HTH domain profile. 327 399 IPR025605 -
Acco03g2136 546 MobiDBLite consensus disorder prediction 1 37 - -
Acco03g2136 546 Gene3D - 59 207 - -
Acco03g2136 546 CDD LOTUS 472 534 - -
Acco03g2136 546 MobiDBLite consensus disorder prediction 1 38 - -
Acco03g2136 546 Pfam OST-HTH/LOTUS domain 329 394 IPR025605 -
Acco03g2136 546 Pfam OST-HTH/LOTUS domain 472 534 IPR025605 -
Acco03g2136 546 CDD PIN_limkain_b1_N_like 61 187 - -
Acco03g2136 546 ProSiteProfiles OST-type HTH domain profile. 471 545 IPR025605 -
Acco03g2136 546 Gene3D - 327 396 IPR041966 -
Acco03g2136 546 Gene3D - 468 538 IPR041966 -
Acco03g2136 546 CDD LOTUS 328 397 - -
Acco03g2136 546 PANTHER LIMKAIN B LKAP 57 510 IPR024768 GO:0005777|GO:0010468
Acco03g2136 546 Pfam NYN domain 61 200 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2136 Acco-ChrAcco03 47404290 47407005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2136 58 222 C2H2 Transcription Factor Family AT5G61190 41.212 1.44e-28 119