Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2133 ATGCCTGGGAGTTTAGAGCCGTTGGATTTGGGGATTCAGATTCCTTACCACTTCAGGTGTCCGATCTCTCTCGAGCTGATGCGTGACCCCGTCACCGTCTGCACCGGTCAGACCTACGACCGAGCCAGTATCGAGGCGTGGGTCGCCACCGGCAACACTACATGTCCGGTCACTCGTGCTCCGCTCACCGACTTCACTCTTATTCCCAACCATACTCTTCGCCGTCTTATCCAGGATTGGTGTGTCGCTAATCGGGCTTTCGGAGTTGAGCGTATTCCCACTCCCAAACAACCCGCCGACCCGAGTTTAGTTCGTTCCTTGTTGAATCAAGTCTCTTCCGAGTCGGTTCCGAGTCAATCACGCCTCTCTGCCTTGCGTCGACTCAGGGGACTCGCGCGTGACTCAGACAAGAATCGTTCTCTTATTGGCTCTGGCAACGTTCGTGAAATCCTTCTCCCTATTGTTTTCTCCGAGCTCAATTCCGATTCTTCCGAGCTGCACCAGGAGTCACTCGCTCTTCTTGTAATGTTTCCACTTGCTGAGCCGGAATGCACGTCCGTGGCATCGGATCCGGATAAAATCAGGTACCTATCGCGTCTCCTGTTTCACACATCAATAGACGTCCGAGTCAACTCGGCAGCGCTCATCGAAATCGTTGTGGCCGGAACTCGTTCGTCGGAGCTCCGATCTCAAATAAGCTGTATCGACGAAATCTACGAGGGAGTCATCGACATTTTGAAGAATCCAATCGCGTACCCTCGAGCTCTCAAGATCGGAATCAAGGCGTTGTTCGCTCTGTGCCTAGTGAAAGAGACGCGGGAAAAAGCGGTGACCGCCGGAGCACCGGAGATCCTTATCGACCGGTTGGCAGATTTCGAGAAATGCGACGTGGAGAGGGCCTTGGCGACGATCGAATTGCTGTGTAGAATCCCGGCGGGATGCGAGGCCTTTGCAGGGCACGCGCTGACGGTATCGCTGCTGGTGAAGATAATACTTAAAGTATCTGACCGGGCGACGGAGTACGCAGCGGGGGCGCTGCTGTCACTGTGCTCGGAATCGGAGCAAAGCCAGAGGGAGGCGGTGGCGGCGGGGGTGCTGACGCAGCTGCTGTTGCTGGTGCAGAGCGATTGCACGGTGAGAGCGAAGAAGAAGGCGCAACTATTGCTGAAGCTCCTTCGGGATTCGTGGCCGCAACAAGATTCCCTCGGAAACTCGGACGATTTTGCATGCAGCGAAGTCGTCGTTGCGCTCTTGTGA 1257 0.5537 MPGSLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPSLVRSLLNQVSSESVPSQSRLSALRRLRGLARDSDKNRSLIGSGNVREILLPIVFSELNSDSSELHQESLALLVMFPLAEPECTSVASDPDKIRYLSRLLFHTSIDVRVNSAALIEIVVAGTRSSELRSQISCIDEIYEGVIDILKNPIAYPRALKIGIKALFALCLVKETREKAVTAGAPEILIDRLADFEKCDVERALATIELLCRIPAGCEAFAGHALTVSLLVKIILKVSDRATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTVRAKKKAQLLLKLLRDSWPQQDSLGNSDDFACSEVVVALL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2133 418 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Acco03g2133 418 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Acco03g2133 418 Gene3D - 92 416 IPR011989 -
Acco03g2133 418 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Acco03g2133 418 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Acco03g2133 418 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
Acco03g2133 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Acco03g2133 418 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Acco03g2133 418 CDD RING-Ubox_PUB 15 67 IPR045210 -
Acco03g2133 418 SUPERFAMILY RING/U-box 12 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2133 Acco-ChrAcco03 47367968 47369224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2133 1 415 U-box Gene Family AT3G19380 69.834 0.0 564