Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2130 ATGGCTGAAGAGAAGGAAGCTCAAAACCAGATGGGACCTTGGGAGACTCATCAGTCATGGGGTTTCTCGAATCCTGACGACGAGAAATTACCAAACATGGATCCACCACCAATCATAGGAAGCTCTTCTAACAATAATGACCCTCTTATTGCTCATCACAACCAACTAGTCGTCGACGAAGCTGGAGTTGCTGCTCAAGGTAATGATAAGATGACGCCGTTTGAGACAGGCCTGGGAGGAATAAGGAAGAGGAATACTACTGGTAAAAACGCCACCGCCGGAGGAGAAGGGAAAGATGGGAACGGAGCTGGTGGTGGTGAGGCCGCCGCTGCCGGCGCTCACGATATGCATATATGGACAGAGAGGGAGAGGAGGAAGAAGATGAGAAACATGTTCGCCGAACTTCATTCCCTGCTTCCCCAGCTTCCTCCCAAGGCTGACAAATCAAGCATTGTTGACGAAGCGGTGAGGTTCATCAAAATCCTGGAGAACACTCTGGAGGATCTGGAAAAGAAAAAACAGGAAAGGCTAAAACAAGCCCAGCAGCCACCAGCTGATGATAATTCAAGCACCACCATTGTGTATGACCCTTCTTCTGTGACTAATATAAACTCTTATCAGGAAAATCCCTCTGCAGTTTCAAGGGAGATTTTCATGGCTGATCATGGTGGATCATCTTCCATTATTAACAATTCAAGCACTAATAACAACAACAACTTGATGGTCTCCACCACAAACGCCTTTATGAATACTATTGGAACTTCATCAACTTCTTCTTCACTGTCACTTCCTGGCGGAGTTATGAATAATAACAAAGTAGGGTTTCAGACTTGGAGCTCTTCAAATGTTGTCGTCAACATCAGCGGTGACCAGGCTCAGTTCAATGTGTGCTCCCTCAAGAAGCGAGGCCTCTTCACCAATATCTGTACTGTGTTTGAGAAGTACAGGATCGATGTTTTATCTGCTCATGTGTCATCTGATGATCACCGATGCTTTTTCATGATTCATACAAAGGCAAATGGAGGTTCAAATCGGTATAAAGTGTCATTGACAGCGGAGGAAACTTTCAGGCAAGCAGCTGCAGAAATGACAATGTGGCTATCTTAA 1107 0.4544 MAEEKEAQNQMGPWETHQSWGFSNPDDEKLPNMDPPPIIGSSSNNNDPLIAHHNQLVVDEAGVAAQGNDKMTPFETGLGGIRKRNTTGKNATAGGEGKDGNGAGGGEAAAAGAHDMHIWTERERRKKMRNMFAELHSLLPQLPPKADKSSIVDEAVRFIKILENTLEDLEKKKQERLKQAQQPPADDNSSTTIVYDPSSVTNINSYQENPSAVSREIFMADHGGSSSIINNSSTNNNNNLMVSTTNAFMNTIGTSSTSSSLSLPGGVMNNNKVGFQTWSSSNVVVNISGDQAQFNVCSLKKRGLFTNICTVFEKYRIDVLSAHVSSDDHRCFFMIHTKANGGSNRYKVSLTAEETFRQAAAEMTMWLS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2130 368 Pfam Helix-loop-helix DNA-binding domain 117 162 IPR011598 GO:0046983
Acco03g2130 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 183 IPR036638 GO:0046983
Acco03g2130 368 MobiDBLite consensus disorder prediction 1 47 - -
Acco03g2130 368 MobiDBLite consensus disorder prediction 174 193 - -
Acco03g2130 368 MobiDBLite consensus disorder prediction 11 25 - -
Acco03g2130 368 MobiDBLite consensus disorder prediction 72 109 - -
Acco03g2130 368 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 4 367 IPR044278 GO:0003700|GO:0006355|GO:0009960
Acco03g2130 368 SMART finulus 120 168 IPR011598 GO:0046983
Acco03g2130 368 Coils Coil 152 182 - -
Acco03g2130 368 CDD bHLH_AtbHLH_like 117 170 IPR045239 -
Acco03g2130 368 Gene3D - 108 180 IPR036638 GO:0046983
Acco03g2130 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2130 Acco-ChrAcco03 47355988 47360132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2130 114 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.147 3.18e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco03g2130 HLH 1.6e-09 No_clan