Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2096 ATGCAATGTGATTCAGGCAAGAGTTGGCTGAATGGGGAAGGTTCATCCTTTCGACATGATACCTTAGAGGCCAATACTATCAGCATGGAGCCACCCTCAGATAAAATGAGAAGCAAAACCAGGGAGCTAAGGGGCCATAACAATATGTCAGACCAGCTGCATGCAATTGATCCGGGAGCTACACATTCTGAATTGCCAGGAAAAACTAATCAGATTGGCTCTGAATCTTTGGACAATGAACAAAGGGTTGTTGGTACCAGGGAAACCACTTCTCTTCTTGATGAAAAATCACCTACAGATGGCGTGACTGGGAATTCTGTTATTCAAGTTCCTGCTCAACCTCAATGTGACTTAGACAAGAGTTGTCAAACTGAAGAAGGTTCAAGTTTTCAGCATAATACTTTTGAACTGGGCAATGCTATTGGCATGGATGCTTCCTCAGATCACACGGGTAGCGAAACTATAAAGACAACGTGCCATATTGAAGATGCCTCAGAACAGTTGCATACGCTTCCTCCCAGAACTGCTCATTTTAAAATGTCTGAGAAAACTAATCAGACTGGCTCTGAATTTTTGAACAATGAACAAAGGGTCGTAGGTACTGGGGAAACCAGCTCTCTTCCTGATGGAACACAACTTACAATTTCTGACGGTATGACTGGAGATTCTGTCATTCAATTGCCAACACAATCGCAATGTGACTTAGAAAATAGTTGCCAGAATGGAGGAAGTTCATGCTTTCAGCATAATACCTTAAAACATGTTTCTGGTTCTTTATCGAATGATGAATCCCAGGGCAAATGTCAGCAGGCCTCCCAAAATGTTCATGATGAAACCGTGGAAAGAAGTGGTGCAAATGAACAATTAGATGCACCTTCTCAAGATGTTGCCAGGGGCAGTAGTCCTAATTCTTTGCTAAGAAACTCCAAACGGGCAAGTCGTTCCTGGTTAGGAGGCAAGGATAGAAGAACCGCAACATCATTGAGGAAAAAATACATGCTAAGAAGTAGTGATAGAGTTTTGCGGTCTAGGGTCCGTGAAAAACCTAAACCACCCCAATCAAACACTGATCCGGTTAATTTGGATCATGCTGGAGAAAGTAGAAGAAAGCGCAGGAAGAATAAGGGTAGAGGAAGGAGAGTGATGGATGAGTTTTCAAGAATCAGAGCACGCCTGAGATATTTTTTAAGTCGAGTGAGCTATGAGCAGAACCTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGTGCTAAGTCTAGAATACTTGGTTTTAAATTGAAAATTAGGGATTTGTTTGGACATTTGGATACACTGTGTGCTGAAGGGAGGCTTCCACAATCTTTGTTTGATTCTGAAGGAGAGATTTGCAGTGAGGATATATTTTGTGCAAAATGCAGGTCCAAAGACTTGACCACTGGTAATGATATAATACTTTGTGATGGTGCATGTGATCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTGTTATCTGAGAATATTCCACCTGATGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTTAATGACTCCTTCGGAACAAGCCTCTCTATTTCTGATTCTTGGGAGAGGGTTTTTCCAGAGGCAGCTGCAGCTGCTGGAAATAATGTGGATGACAACTTGGGACTTCCATCAGATGATTCCGGTGATGATGATTATAATCCTGATGTTGCAGAAGATGAAGATGAGGACATTGAAGGAGGCAAGTCAAGTTCTGGTGAGTCTGAAAATGCTTCTGCTTCTGAGGAAATGGGCGCTTCACGTAAAGAGGATCCATACTCAGGCCTTCCTTCTGAAGATTCAGAGGACAACGATTATGATCCAAATGCTGTAGATCATGAGAAAGATGTAGCTGAAGAAAGTTCAAGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGATGTAGTTAAGGGTAATGCATTATCTGGACAGGATAACTATCCTGTGCCTGCATCATCTTTGCCAGAGCTAGACCCTGGTGAAGAAGATTCCACTCCGCTTTCTGGGAAAAGACAAATTGAAAGGTTGGACTACAAAAAACTGTATGATGAGACCTACCAAAATGCTTCATCTGATACTAGCGATGATGAAGATTGGACTGCTAGCCCTGCTTCAAGTAGGAAAAAGAAAGTCGCTAGCAAAGGGCCATCAGTGTCACCAAATGGGAAAACCTCAATACTGGATCATATGCAGAAAGGAACTGAAAATACTCCTATGAGTAATAATCGTCCAACTAAAGTTGAAAATATGGACAATTCACCCAGTAAATCACTTGAAGGCTCTAAAAGGGCTGGTTCAAATGACAAAAAACGAGGATCTTCAACTTACAAAAGACTTGGGGAAGATGTAGTTAAGGTACTTCACAAAAACTTTAAAGAAAATCAGTACCCAGACCGTGCCACAAAAGAAAGCTTTGCACAAGAACTTGGACTTACTTTCAACCAGGTTAGTAAATGGTTTGAGAATGCTCGTTGGAGCTTTCGAAATTCCCCACGAATGGAAGCCATGGCAAGTAAAAGTGCTTCACTGGGCGCCACTTCCAGCGGAGTTGAAAATGAAATAGTAGCTGGGGATGAGAAGTTGGACGCAAAACCAGTGCCTCAGGAGGGGAATAATATACAGAAAGCAAAATCCCAAAGCTCTAGAAAGAGGAAGCAAAATACAGATACTGAGGAATCTGGTGCAAATATAAACATTGATAGTGCGGCAACAAATCTTCCTGTTCACTCACCTAGAGCTGGTGAAGTGCAAAGAAATCACAAAATGAAAACAAGGAAGAGAAAATGA 2877 0.4209 MQCDSGKSWLNGEGSSFRHDTLEANTISMEPPSDKMRSKTRELRGHNNMSDQLHAIDPGATHSELPGKTNQIGSESLDNEQRVVGTRETTSLLDEKSPTDGVTGNSVIQVPAQPQCDLDKSCQTEEGSSFQHNTFELGNAIGMDASSDHTGSETIKTTCHIEDASEQLHTLPPRTAHFKMSEKTNQTGSEFLNNEQRVVGTGETSSLPDGTQLTISDGMTGDSVIQLPTQSQCDLENSCQNGGSSCFQHNTLKHVSGSLSNDESQGKCQQASQNVHDETVERSGANEQLDAPSQDVARGSSPNSLLRNSKRASRSWLGGKDRRTATSLRKKYMLRSSDRVLRSRVREKPKPPQSNTDPVNLDHAGESRRKRRKNKGRGRRVMDEFSRIRARLRYFLSRVSYEQNLIDAYSGEGWKGYSMEKLKPEKELQRAKSRILGFKLKIRDLFGHLDTLCAEGRLPQSLFDSEGEICSEDIFCAKCRSKDLTTGNDIILCDGACDRGFHQFCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDSFGTSLSISDSWERVFPEAAAAAGNNVDDNLGLPSDDSGDDDYNPDVAEDEDEDIEGGKSSSGESENASASEEMGASRKEDPYSGLPSEDSEDNDYDPNAVDHEKDVAEESSSSDFTSDSEDLADVVKGNALSGQDNYPVPASSLPELDPGEEDSTPLSGKRQIERLDYKKLYDETYQNASSDTSDDEDWTASPASSRKKKVASKGPSVSPNGKTSILDHMQKGTENTPMSNNRPTKVENMDNSPSKSLEGSKRAGSNDKKRGSSTYKRLGEDVVKVLHKNFKENQYPDRATKESFAQELGLTFNQVSKWFENARWSFRNSPRMEAMASKSASLGATSSGVENEIVAGDEKLDAKPVPQEGNNIQKAKSQSSRKRKQNTDTEESGANINIDSAATNLPVHSPRAGEVQRNHKMKTRKRK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2096 958 MobiDBLite consensus disorder prediction 792 810 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 693 712 - -
Acco03g2096 958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 532 IPR013083 -
Acco03g2096 958 SMART PHD_3 475 528 IPR001965 -
Acco03g2096 958 Pfam PHD-finger 475 530 IPR019787 -
Acco03g2096 958 MobiDBLite consensus disorder prediction 271 380 - -
Acco03g2096 958 ProSiteProfiles 'Homeobox' domain profile. 800 860 IPR001356 GO:0003677
Acco03g2096 958 MobiDBLite consensus disorder prediction 1 33 - -
Acco03g2096 958 CDD homeodomain 808 860 IPR001356 GO:0003677
Acco03g2096 958 MobiDBLite consensus disorder prediction 1 107 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 562 810 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 185 222 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 64 107 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 747 791 - -
Acco03g2096 958 SUPERFAMILY Homeodomain-like 801 863 IPR009057 -
Acco03g2096 958 MobiDBLite consensus disorder prediction 921 935 - -
Acco03g2096 958 Gene3D - 803 872 - -
Acco03g2096 958 ProSitePatterns Zinc finger PHD-type signature. 476 527 IPR019786 -
Acco03g2096 958 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 265 922 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 714 730 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 34 48 - -
Acco03g2096 958 Pfam Homeodomain 810 855 IPR001356 GO:0003677
Acco03g2096 958 MobiDBLite consensus disorder prediction 314 351 - -
Acco03g2096 958 ProSiteProfiles Zinc finger PHD-type profile. 473 530 IPR019787 -
Acco03g2096 958 SMART HOX_1 802 864 IPR001356 GO:0003677
Acco03g2096 958 MobiDBLite consensus disorder prediction 573 596 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 286 311 - -
Acco03g2096 958 MobiDBLite consensus disorder prediction 868 958 - -
Acco03g2096 958 SUPERFAMILY FYVE/PHD zinc finger 465 533 IPR011011 -
Acco03g2096 958 FunFam Homeobox protein HAT3.1 456 532 - -
Acco03g2096 958 CDD PHD_PRHA_like 475 527 IPR045876 -
Acco03g2096 958 MobiDBLite consensus disorder prediction 637 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2096 Acco-ChrAcco03 47032365 47037564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2096 274 861 Homeobox Transcription Factor Family AT3G19510 43.192 8.49e-133 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Acco03g2096 PHD 9.1e-11 CL0390