Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2079 ATGGCTTTAGAAGCTCTCAATTCTCCTACTGCCGCCACAACTTCCTTCACCTTCAACTATGACCAAGAAGATTATGATGATCTCGATCTTCACTGGGCTAAGGGAAAGCGTTCCAAACGACCTCGTTTCGACTCCAACAACCCTCCTTCTGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCCCAAAGCGGCCAAAACAACAAGTCTGTCGCCGCCGCCACAGCATCCTCTCCACCACTGCGTCCTTCATCTTCATCGTCGCCTCCTAATAATCTTGTGAAGCTCTCTCATAGGTGTACCGTCTGCGATAAAGTCTTCTCTTCTTACCAAGCTCTCGGTGGCCACAAGGCCAGCCACCGCAAGTCATCCTCGGAGTCCGCTGCCGCTGCCGAAAACGCCACCTCTACTTCCTCTGGTGCTGCCGCCACCGGAAGGTTGCACGAGTGTTCCATCTGTCACAAGGTCTTCCCTACTGGTCAGGCCTTGGGTGGACACAAGAGATGTCACTATGACGGCGGCGCTGGCAACGCAAACAGCAGTAGCGCCGGCGCCGGTGTGTCTTCATCGGAGGGAGGCGGCGCGTCTACTGTCAGCCTCCGTGGGTTCGACTTAAACCTGCCGGCACCGCTCATGGACTTATCTCCGGCAAGGTTAGGAGACGACTATTCTGGGATGAAGAAGATCGGTGTAGAGCAAGAGGTGGAGAGTCCGTTGCCGGTGGGTGCCGCCGGTAATAAGAGAAGACGTTTGCTTTTTACCGATGATGAAGAAGACGATGTAAAGCCTTCGTTGCTGTTACAGAATTAA 813 0.54 MALEALNSPTAATTSFTFNYDQEDYDDLDLHWAKGKRSKRPRFDSNNPPSEEEYLALCLIMLAQSGQNNKSVAAATASSPPLRPSSSSSPPNNLVKLSHRCTVCDKVFSSYQALGGHKASHRKSSSESAAAAENATSTSSGAAATGRLHECSICHKVFPTGQALGGHKRCHYDGGAGNANSSSAGAGVSSSEGGGASTVSLRGFDLNLPAPLMDLSPARLGDDYSGMKKIGVEQEVESPLPVGAAGNKRRRLLFTDDEEDDVKPSLLLQN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2079 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 210 IPR044653 GO:0003700
Acco03g2079 270 MobiDBLite consensus disorder prediction 119 141 - -
Acco03g2079 270 Pfam C2H2-type zinc finger 99 123 - -
Acco03g2079 270 Pfam C2H2-type zinc finger 149 173 - -
Acco03g2079 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Acco03g2079 270 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Acco03g2079 270 SMART c2h2final6 149 171 IPR013087 -
Acco03g2079 270 SMART c2h2final6 99 121 IPR013087 -
Acco03g2079 270 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Acco03g2079 270 Gene3D Classic Zinc Finger 97 171 - -
Acco03g2079 270 SUPERFAMILY beta-beta-alpha zinc fingers 99 171 IPR036236 -
Acco03g2079 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Acco03g2079 270 MobiDBLite consensus disorder prediction 71 93 - -
Acco03g2079 270 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2079 Acco-ChrAcco03 46849265 46850077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2079 1 241 C2H2 Transcription Factor Family AT1G27730 45.020 9.28e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco03g2079 zf-C2H2_6 8e-13 CL0361