Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2040 ATGGCGATGATGAACAACAAAAAGGGTAGCTCAGGTCGTCAAAAGATTCCAATCAAGAAAATACCAAAAAAAAGTAATTTACAAGTTACTTTTTCCAAGCGTCGTTCAGGACTATTCAAGAAAGCCAGTGAGCTTTGTACGCTTTGTGGGGTAGAAATCGCCATGATAGTATTCTCTCCAGCTAACAAAGCTTTCTCTTTTGGCCACCCAGAAGTTGAATCCATAATCGACCGATACCTAGTAACCTTAGCTCGAAAATCGTCCCATAATTATGTCGTGGCCCCGTCGTCATCTTCATCGTCAACATCAATAATCACTACCGGTGTTCATCATCATCGGAATTCTTCTAACGTTATTTGTAATCTTAATATGCAGTTAACGCAGGTTGTTAACCAGTTGGAGATAGAGAAGAAGCGAGGCGAAGAACTCGATCGTACGAGGAAAGTGAGGCGGAGAGAGTTCTGGTGGGAGTGTCCAATTGATGAGATTAATTCCGTTGATCAGTTACAGCAATTGAGGATTGCAATGGAGGAACTCAAAAAAGATGTTTTAAGGCAAAAGAGTTTTGCTTCGTCTTGTTCATCACAGATTAATAATAATAATAATATTGTTGGGGAAGATTATTATGGATCGTTCGGACGTTACGATGATGCCTTGGACAATAAATTGTTCTTAGGTGGTGGTGCTCAGAACGATATTAATATTGATGCTAATAATTCGTCCAGTGTTGTTACTGATTATCATCATGCCTTTAATAACCTTGTCTTCCAAAACCAGGACATGGGGTTTAAGTTTACTTCTCAGTTTTGA 810 0.3926 MAMMNNKKGSSGRQKIPIKKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPANKAFSFGHPEVESIIDRYLVTLARKSSHNYVVAPSSSSSSTSIITTGVHHHRNSSNVICNLNMQLTQVVNQLEIEKKRGEELDRTRKVRRREFWWECPIDEINSVDQLQQLRIAMEELKKDVLRQKSFASSCSSQINNNNNIVGEDYYGSFGRYDDALDNKLFLGGGAQNDINIDANNSSSVVTDYHHAFNNLVFQNQDMGFKFTSQF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2040 269 Coils Coil 123 143 - -
Acco03g2040 269 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Acco03g2040 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 Coils Coil 166 186 - -
Acco03g2040 269 Gene3D - 23 96 IPR036879 GO:0003677|GO:0046983
Acco03g2040 269 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 SUPERFAMILY SRF-like 12 87 IPR036879 GO:0003677|GO:0046983
Acco03g2040 269 Gene3D - 111 205 - -
Acco03g2040 269 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Acco03g2040 269 PANTHER MADS BOX PROTEIN 13 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2040 Acco-ChrAcco03 46499082 46499891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2040 10 184 Type I MADS-box Gene Family AT2G24840 51.685 7.54e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g2040 SRF-TF 6.4e-24 No_clan