Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2039 ATGGATCTCATGAAACAAATGAAGAAAACCACAACCACAGGTCGCAAGAAGATTGAGATAAAGGAGATAGACAAGGATTCCAACAAACAAGTCACCTTCTCAAAACGACGCACTGGACTGTTCAAGAAAGCAAGCGAGCTCTGCGTTTTGTGCAATGCTCAGATCGCCATCGTCGTGTTCTCCCCGGCCGACAAAGCCTTCTGCTTCGGCCAGCCCAACGTAGAAGCGGTCCTCCGCCGCTACCTAACAACAGAAGACCATGGCGGCGAAGAACCCGTCCGGGCGGCGAGCCAGGCCGGTTCTTCGGTGTCATCTTACGAGGAACTTAACAGACAACATGAGGAAGCGGTTAGGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATCGAAAATGTGGCTACGGTTTGGGACAGAGGAAATTGGTGGGATGAACCCATTGATGAGATGGATTTGGATCAGTTAGAGCAATATATGATGGCTATGCATGAGTTAAGAAGAAAGGTCGCTGAGAAGGCTGATGATTTCATGAGGGTTGCGATAATGCAGCCGCCGGTGTCGTCGTTATATGGAGAGAGTTCATTGGGTGGTCTTCTTCATGGAGGAGGTGGCGGCACTGGCGTCGGCTATGGTGGTTTTGCTAACCAGTTTGGCGGCGGTGGCGGCCTTGTTGCTTATCATCATGACAAGTTTGAAATTTGA 702 0.5014 MDLMKQMKKTTTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIVVFSPADKAFCFGQPNVEAVLRRYLTTEDHGGEEPVRAASQAGSSVSSYEELNRQHEEAVRALEMEKQQLEEIENVATVWDRGNWWDEPIDEMDLDQLEQYMMAMHELRRKVAEKADDFMRVAIMQPPVSSLYGESSLGGLLHGGGGGTGVGYGGFANQFGGGGGLVAYHHDKFEI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2039 233 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Acco03g2039 233 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Acco03g2039 233 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Acco03g2039 233 Coils Coil 155 175 - -
Acco03g2039 233 Coils Coil 103 133 - -
Acco03g2039 233 PANTHER MADS BOX PROTEIN 15 171 - -
Acco03g2039 233 Gene3D - 26 90 IPR036879 GO:0003677|GO:0046983
Acco03g2039 233 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Acco03g2039 233 FunFam Agamous-like MADS-box protein AGL62 25 90 - -
Acco03g2039 233 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Acco03g2039 233 CDD MADS_MEF2_like 18 86 IPR033896 GO:0000977|GO:0045944
Acco03g2039 233 MobiDBLite consensus disorder prediction 88 108 - -
Acco03g2039 233 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Acco03g2039 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2039 Acco-ChrAcco03 46492173 46492874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2039 12 203 Type I MADS-box Gene Family AT2G24840 39.806 1.39e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g2039 SRF-TF 9.2e-23 No_clan