Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2029 ATGCTGCAAAATTTGGCGGCTGAAGCTAAAGATTCACAAACGGGGAAGAAATTCGCCACGGGACAAACGCCCTCTGCAGCACCAGTTCCTCCTCGATCAGGAAAAAGCAAAATCTTAATAATTGTTGCCATTATTGTGCCAATTATTGTTTCTGTGACACTTTTTGTTGCGGCTTCTTGTTTCCTGCGCAAGAGGGCAAGCAAGAACAAGAAGTATAATTCGTTCACAGAGGATGACATTGGGAATGATCTTACAGACGTGGAGTCTCTGCAATTTGAATTAGCGACAATAGAAGCTGCCACAAAAAGGTTCTCAGATGAGAACAAGATTGGCCAAGGTGGATTTGGTGCTGTTTACAAGGGTATCCTCCCAAATGGACAGGTGATTGCTGTGAAGAGGTTGTCGGTAACTTCATTGCAGGGCGCTCTGGAATTTAAGAATGAAGCTGCTCTTGTGGCCAAGCTTCAACACAGGAATTTAGTCAGGCTCTTGGGATTTTGCTTGGAGGGGCGAGAAAAGATACTTGTTTATGAATACATCCCAAACAAAAGCCTTGATCACTTTCTATTTGATTCTGAGAAGAAAACAATGCTTGGTTGGTCAAGGCGATACAAGATCATAATGGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCAACTTAGAATAATACATCGTGACCTCAAAGCGAGCAATGTTTTATTAGATGCTGACATGAACCCAAAAATTTCAGATTTTGGCATGGCAAAAATCTTTCATGGAGAACAAACTCAAGTAAACACTGGAAGAATAGTTGGAACCTTTGGTTATATGTCTCCAGAATATGCAATGCGCGGGCAATTTTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTTACTGGCAAGAAGAACTCTGAGCTTTATCAATCACATGAAGCAGAAGACCTCTTAAGCTATGCTTGGACAAATTGGACACAGAAAACACCTCTGGAGATGAGAATCCTTCTGATAGACCTTCAATGGCAACCATAG 1035 0.4135 MLQNLAAEAKDSQTGKKFATGQTPSAAPVPPRSGKSKILIIVAIIVPIIVSVTLFVAASCFLRKRASKNKKYNSFTEDDIGNDLTDVESLQFELATIEAATKRFSDENKIGQGGFGAVYKGILPNGQVIAVKRLSVTSLQGALEFKNEAALVAKLQHRNLVRLLGFCLEGREKILVYEYIPNKSLDHFLFDSEKKTMLGWSRRYKIIMGIARGILYLHEDSQLRIIHRDLKASNVLLDADMNPKISDFGMAKIFHGEQTQVNTGRIVGTFGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVTGKKNSELYQSHEAEDLLSYAWTNWTQKTPLEMRILLIDLQWQP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2029 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Acco03g2029 344 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 333 - -
Acco03g2029 344 MobiDBLite consensus disorder prediction 9 32 - -
Acco03g2029 344 CDD STKc_IRAK 110 304 - -
Acco03g2029 344 ProSiteProfiles Protein kinase domain profile. 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2029 344 SUPERFAMILY Protein kinase-like (PK-like) 88 314 IPR011009 -
Acco03g2029 344 Gene3D Transferase(Phosphotransferase) domain 1 180 340 - -
Acco03g2029 344 Gene3D Phosphorylase Kinase; domain 1 63 179 - -
Acco03g2029 344 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 63 179 - -
Acco03g2029 344 FunFam cysteine-rich receptor-like protein kinase 10 180 341 - -
Acco03g2029 344 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Acco03g2029 344 SMART serkin_6 104 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2029 344 Pfam Protein tyrosine and serine/threonine kinase 107 321 IPR001245 GO:0004672|GO:0006468
Acco03g2029 344 MobiDBLite consensus disorder prediction 9 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2029 Acco-ChrAcco03 46430776 46433253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2029 23 333 Receptor kinase-like Gene Family AT4G05200 61.587 3.40e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco03g2029 PK_Tyr_Ser-Thr 1.9e-46 CL0016