Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2027 ATGACGACGTCCATGGTCATCGCTTCTTCTCACAGAATTTTCTTACTCTTCTTCTTTATTACCTTCCTCCATTTTCCTAAAACTCAAGCACAAACGACTTATCTCCATCACAATTGCTCTTCCAATAGAACCTTCGCTGCCAATAGTGCTTTTCAATCCGACCGGACCATACTCCTCTCTTCCTTAGCTTCCAACAACACCACTGACATCGAGTTCTACAACGCCACCGTTTCCAGTGGCGGCGACACCGTTTACGGCCTCTTTATGTGCCGGGGTGACGTCAACCTCACGACGTGCCACCAATGCGTTGTTAACGCAACCCAACGCTTAACTTCTGAGTGCATAGCTTCGAAGGAGGCAATAATCTGGTACGACGAGTGCCTGCTTCGCTATTCCAACCGCTCCTTCTTCTCCACCGTCGACACAAGGCCAAGGCTTGGCCTCTTGAACACCGGAAATGTCTCAAACCCGGTGAGCTTCATGAGAACACTGTACGATACTATGAACAAGACGGCAGATGATGCTGCTAAACCTGCTGTGGGGAAAAAGAAGTATGCAACCAGAACAGCTAATTTCTCAGCGTTTCAAACGGTGTATTGTCTGGCTCAGTGCACGCCGGACCTCTCGCCGTCAGATTGCAGAAGGTGCCTGAGTGGTACGATTGGGGACCTTGACTGGTGTTGTGATGGTAAGCAAGGAGGAAGAGTTCTATACCCAAGCTGTAATGTTCGCTATGAACTGTACCCTTTCTATCTATCGGATGCTCCAGCACCAACTCCTACACCGGCAATTATTCCTCCTACAAATACTACCGGTTCCCAAGGAAAAGGTGGGATCTCATCGGGGACGATTGTTGCGATCGTGGTTCCAATTTCGGTGGCTGTTCTGATATTTATAGTTGGCATTTGTTGCTTGAGCAAGAGAATGAGGAAGAAGCGTGATTCTGTTCCCGAAGGAAAATCTGCAACTGAAATTAGCAGTTTGGATTCGCTGCAATATGATTTCAGTGCAATTGAAGAAGCCACCAACAAGTTCTCTCAAGATAACAAGCTTGGTGAAGGCGGATTCGGAGTGGTTTACAAGGGGAAGCTTGCAAATGGAGAAGAAGTTGCTGTGAAGAGACTCTCACAAGGCTCAGGACAAGGTGTACAAGAATTTAAAAATGAAGTAGAGGTGGTTGCCAAGTTACAACATAGAAATTTAGTGAGGCTTTTGGGTTTTTGTGTGCAAGGAGAAGAGAAAATACTTGTTTATGAATATGTTCCCAATAAAAGTCTCGACTACATTCTTTTTGACCCTGAAAAACAAATACAGCTAGAGTGGACAAAGCGTTACAAGGTTGTTAAAGGAATTGCTCGAGGCATTAAATATCTTCATGAAGACTCGAGGCTTAAAATTATACATCGTGATCTTAAAGCTAGCAATGTATTATTGGACAATGACATGAATCCGAAAATCTCAGACTTTGGTATGGCAAGAATTTTTATGGTCGACCAAACTCAAGGAAATACAAGTCGAATTGTTGGAACATATGGTTATATGCCTCCCGAATACGCTATGCATGGGGAGTTTTCTGTTAAGACTGATGTGTACAGCTTCGGTGTCCTTCTATTGGAGATTATCAGTGGGAAGAAGAATAGTTCTTTCTACGAAATAGAAGGTGCTGCGGACTTGCTTAGCTATGCCTGGAAACTTTGGAAGGATAGTGAACCTTTAGAACTGTTGGACCCCACAATAAGAGAATCTTACACATCAAATGAAGTAATGAGATGCATCCACATAGGTCTATTGTGTGTTCAAGAAGATCCAGCAGAGAGGCCTTCAATGGCTTCCATAGTTCTGATGCTTGATAGTTATTCTGTGACTCTGCCAACACCTTCACAGCCTGCATTTTTTGTACAAAGTGGAACTGATCCAAACATGCCAAAGGACTTCAAATTCGGTCAATCTACGAGCAAGTCAGCACCAATGTCAGTCAACGAAATGTCTGTCAGTGAAGTAACGCCTCGGTAA 2013 0.4416 MTTSMVIASSHRIFLLFFFITFLHFPKTQAQTTYLHHNCSSNRTFAANSAFQSDRTILLSSLASNNTTDIEFYNATVSSGGDTVYGLFMCRGDVNLTTCHQCVVNATQRLTSECIASKEAIIWYDECLLRYSNRSFFSTVDTRPRLGLLNTGNVSNPVSFMRTLYDTMNKTADDAAKPAVGKKKYATRTANFSAFQTVYCLAQCTPDLSPSDCRRCLSGTIGDLDWCCDGKQGGRVLYPSCNVRYELYPFYLSDAPAPTPTPAIIPPTNTTGSQGKGGISSGTIVAIVVPISVAVLIFIVGICCLSKRMRKKRDSVPEGKSATEISSLDSLQYDFSAIEEATNKFSQDNKLGEGGFGVVYKGKLANGEEVAVKRLSQGSGQGVQEFKNEVEVVAKLQHRNLVRLLGFCVQGEEKILVYEYVPNKSLDYILFDPEKQIQLEWTKRYKVVKGIARGIKYLHEDSRLKIIHRDLKASNVLLDNDMNPKISDFGMARIFMVDQTQGNTSRIVGTYGYMPPEYAMHGEFSVKTDVYSFGVLLLEIISGKKNSSFYEIEGAADLLSYAWKLWKDSEPLELLDPTIRESYTSNEVMRCIHIGLLCVQEDPAERPSMASIVLMLDSYSVTLPTPSQPAFFVQSGTDPNMPKDFKFGQSTSKSAPMSVNEMSVSEVTPR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2027 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Acco03g2027 670 FunFam Cysteine-rich receptor-like protein kinase 25 144 250 - -
Acco03g2027 670 CDD STKc_IRAK 351 617 - -
Acco03g2027 670 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Acco03g2027 670 SUPERFAMILY Protein kinase-like (PK-like) 331 635 IPR011009 -
Acco03g2027 670 FunFam Cysteine-rich receptor-like protein kinase 10 307 420 - -
Acco03g2027 670 Gene3D Transferase(Phosphotransferase) domain 1 421 624 - -
Acco03g2027 670 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
Acco03g2027 670 MobiDBLite consensus disorder prediction 644 670 - -
Acco03g2027 670 Gene3D - 30 136 IPR038408 -
Acco03g2027 670 Gene3D - 145 250 IPR038408 -
Acco03g2027 670 Gene3D Phosphorylase Kinase; domain 1 305 420 - -
Acco03g2027 670 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Acco03g2027 670 ProSiteProfiles Gnk2-homologous domain profile. 33 136 IPR002902 -
Acco03g2027 670 ProSiteProfiles Protein kinase domain profile. 345 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2027 670 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 667 - -
Acco03g2027 670 FunFam cysteine-rich receptor-like protein kinase 10 421 623 - -
Acco03g2027 670 Pfam Salt stress response/antifungal 155 248 IPR002902 -
Acco03g2027 670 Pfam Salt stress response/antifungal 39 133 IPR002902 -
Acco03g2027 670 MobiDBLite consensus disorder prediction 643 670 - -
Acco03g2027 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 32 135 - -
Acco03g2027 670 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2027 Acco-ChrAcco03 46421136 46423923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2027 16 670 Receptor kinase-like Gene Family AT4G05200 52.395 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco03g2027 PK_Tyr_Ser-Thr 3.6e-51 CL0016