Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2019 ATGAATCCTAGCTGCAACTTGAGGTTTGAATTATACCGATTTTATAATAATTATGATATAAGTGCTGTTTCGGTGCCTCCAGCTTATCCCCCAAATAATAGTGGTGTTCCAGTAATTACAGGAAAAAATAAAGACAACTCGCGAACAATCATAATAGCGGTGTCCCTTAGTCTTCTCTCGATCACGCTTTTTTGTTTCGGCGTTTATTACTGGAAGAGAAAAAAGAGCCAGCTGAGTGATAAGGCGATTCTGAAGAAAAATTTTGGAAGTGAAGGGGCCACATTAGAGTCATTGCAGTTCAGTTTTGCGACAATTGAAGCTGCAACAGATAAGTTCTCAATCGAAAATAGAATAGGCAAAGGTGGATTTGGAGAAGTCTACATGGGCGTTCTTCCCGATGGTAGAAAAATAGCTGTAAAGAGATTGTCAGAAAATTCTAGTCAAGGTCTAATAGAATTCAAGAATGAGGTTCTACTAATTGCCAGACTTCAACACAGAAACCTGGTGGCTTTGTTAGGATTTTGCTTGAAAGATCAAGAGAAAATACTTCTGTATGAATATGTTCCCAACAAGAGCCTCGATTATTTTTTATTTGGTTCACAAAAGCCAAGAGAGTTGAATTGGCTCGAGCGTTATAAAATTATAGAAGGAATTGCTCGAGGAATTCATTACCTTCATGAACATTCACGCCTTAAAGTAATACATCGAGATCTTAAACCTAGCAATATTTTGTTAGATGATGAGATGCATCCAAAAATTTCTGATTTTGGTATGGCAAGAATGGTTGGTATTGATGAAACTAGGGGGAGCACAAATAGAATTGTTGGAACATTGGGGTACATGTCTCCAGAATATCTTAAATTTGGACTATTTTCTGAGAAATCGGATGTTTTCAGCTTTGGAGTCATTGTTTTAGAAATTATAAGTGGAAAGAATATAAATTCTCACGGTGAATCTCATGAATCTCAGTATGGTGGTGGACTCTTAAGTGATGCTTGGAAGCATTGGAGGGGTGAAAATTTGATAGCCTTATTGGATTTAAATCTGACAGAAACAGGGTCACACATTCCTCACAAACCAGCATTCTTCTTGCATAGTCAAATGGAAGCAGCAGAAACCAGTAGAGCAACAGAGGCTCAACTTGCCGACCACATTCAATATTCCATCAATGAAATATCAGAGAGTGTATTATTTCCTCGCTAG 1203 0.3766 MNPSCNLRFELYRFYNNYDISAVSVPPAYPPNNSGVPVITGKNKDNSRTIIIAVSLSLLSITLFCFGVYYWKRKKSQLSDKAILKKNFGSEGATLESLQFSFATIEAATDKFSIENRIGKGGFGEVYMGVLPDGRKIAVKRLSENSSQGLIEFKNEVLLIARLQHRNLVALLGFCLKDQEKILLYEYVPNKSLDYFLFGSQKPRELNWLERYKIIEGIARGIHYLHEHSRLKVIHRDLKPSNILLDDEMHPKISDFGMARMVGIDETRGSTNRIVGTLGYMSPEYLKFGLFSEKSDVFSFGVIVLEIISGKNINSHGESHESQYGGGLLSDAWKHWRGENLIALLDLNLTETGSHIPHKPAFFLHSQMEAAETSRATEAQLADHIQYSINEISESVLFPR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2019 400 SMART serkin_6 112 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2019 400 Gene3D Transferase(Phosphotransferase) domain 1 188 395 - -
Acco03g2019 400 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 351 - -
Acco03g2019 400 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Acco03g2019 400 ProSiteProfiles Protein kinase domain profile. 112 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2019 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Acco03g2019 400 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 72 187 - -
Acco03g2019 400 SUPERFAMILY Protein kinase-like (PK-like) 95 381 IPR011009 -
Acco03g2019 400 Gene3D Phosphorylase Kinase; domain 1 72 187 - -
Acco03g2019 400 Pfam Protein kinase domain 113 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2019 400 FunFam Lectin-domain containing receptor kinase A4.3 188 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2019 Acco-ChrAcco03 46258734 46260899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2019 3 346 Receptor kinase-like Gene Family AT4G05200 51.541 2.46e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco03g2019 Pkinase 8.6e-47 CL0016