Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g2000 ATGGGGCAGTGCACACCGGATATATCTGCCAATGAATGTTTTAACTGTCTGAGAAGAACAAGTGCAGAGTATCCGAGTTGCTGTTTTGGGAAGGTAGGGGGAGTAGTCCGTGCTCCCAGTTGTAATGTAAGGTATGAAGTGTACCCCTTTTATGGAGTGACTTCGCCACCGCCATCTCCACCGCCAGAGACCCCTTCCAACGATAAAAGCAAGATTTCAGAAAGGAGAAAGAACTCAGCTGGGACAGTTATGGCCATAGTTGTTCCAACAGTGATATTTATATTGCTTGTCTCCCTCTGCTTCTTCTGCCTTATTAAAAGGAGAGCTAAAAAGAATGATTCCTCGTTTCCCCAAGAAAGTGATGTTGACATTTCTAGTGTAGAATCTCTGCAATTTGATTTGGATGTCATCAAATCAGCCACAAACAACTTCTCTCCTGACAGAAAACTAGGTCAAGGAGGATTTGGTGAAGTGTACAAGGGCATCCTACCTAGTGGACAAGAGTTGGCTGTGAAGAGATTATCAAGTAGTTCCAAACAAGGTGTAGAACAATTTAAAAACGAAGTTGTTACTATGGCAAAACTTCAACATAGAAATCTTGTAAGGCTACTAGGGTTCTGCTTGGATGAAGAAGAAAAGATTCTCATATATGAATTTGTTCCCAAGAAAAGCCTGGATAGATTTCTATTTGAACCTGGAAATATAGGCGAATTGAATTGGTCAAAGCGCTATAAGATTATTGAAGGCGTTGCGAGAGGGTTGCTTTATCTTCATGAAGATTCTCGACTGAAGATTATACACCGTGACCTCAAAGCTAGTAATGTATTGTTGGATGAAAATTGGAATCCAAAAATTTCTGATTTTGGTATGGCTAGAATTTTTGGAGTTGATCAATCCGAAGAAGACACGAGTAGAGTCGTGGGCACATATGGCTACATGGCTCCAGAATATGCTATGCATGGTCAGATTTCAGTCAAATCTGATATATATAGTTTTGGTGTCTTGACCCTAGAGATTATCTCGGGCAAAAAGAATACATCTTTCTACATATCAAATTGTGCTGAAGACTTGTTAAGCTATGCTTGGAAGCTGTGGAAGAAAGGGACGCCATCAGAATTGCTGGATCCTAGTCTAAGAGATTCTTATTCAAGAAACCAAATTATTAAATGCATTCACATGAGCTTGTTGTGTGTTCAAGAAAGTCAATCTCTGAGACCTACAGTAAAATCCATTGTGGTGATGTTAGGTAGTGAATCTGTGACCCTACCAGATCCTGAAGAGCCAGCATTTTTTGTCGATCATAGTGGAACAAATGCAAACAAAGCTGCCACAAATGATGGAAATAGGTCCGATCAATCAACAAGCGGATCTGTGCAATGGTCTGTGGATAAAGATCCGATTACTGACTTGTACCCTCGCTAG 1422 0.4058 MGQCTPDISANECFNCLRRTSAEYPSCCFGKVGGVVRAPSCNVRYEVYPFYGVTSPPPSPPPETPSNDKSKISERRKNSAGTVMAIVVPTVIFILLVSLCFFCLIKRRAKKNDSSFPQESDVDISSVESLQFDLDVIKSATNNFSPDRKLGQGGFGEVYKGILPSGQELAVKRLSSSSKQGVEQFKNEVVTMAKLQHRNLVRLLGFCLDEEEKILIYEFVPKKSLDRFLFEPGNIGELNWSKRYKIIEGVARGLLYLHEDSRLKIIHRDLKASNVLLDENWNPKISDFGMARIFGVDQSEEDTSRVVGTYGYMAPEYAMHGQISVKSDIYSFGVLTLEIISGKKNTSFYISNCAEDLLSYAWKLWKKGTPSELLDPSLRDSYSRNQIIKCIHMSLLCVQESQSLRPTVKSIVVMLGSESVTLPDPEEPAFFVDHSGTNANKAATNDGNRSDQSTSGSVQWSVDKDPITDLYPR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g2000 473 SUPERFAMILY Protein kinase-like (PK-like) 121 415 IPR011009 -
Acco03g2000 473 FunFam Cysteine-rich receptor-like protein kinase 10 106 219 - -
Acco03g2000 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Acco03g2000 473 ProSiteProfiles Gnk2-homologous domain profile. 1 50 IPR002902 -
Acco03g2000 473 MobiDBLite consensus disorder prediction 54 75 - -
Acco03g2000 473 FunFam cysteine-rich receptor-like protein kinase 10 220 422 - -
Acco03g2000 473 Gene3D Transferase(Phosphotransferase) domain 1 220 422 - -
Acco03g2000 473 Pfam Salt stress response/antifungal 1 47 IPR002902 -
Acco03g2000 473 MobiDBLite consensus disorder prediction 433 473 - -
Acco03g2000 473 CDD STKc_IRAK 150 415 - -
Acco03g2000 473 SMART serkin_6 144 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2000 473 MobiDBLite consensus disorder prediction 437 462 - -
Acco03g2000 473 ProSiteProfiles Protein kinase domain profile. 144 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g2000 473 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 46 458 - -
Acco03g2000 473 Pfam Protein tyrosine and serine/threonine kinase 147 413 IPR001245 GO:0004672|GO:0006468
Acco03g2000 473 Gene3D Phosphorylase Kinase; domain 1 105 219 - -
Acco03g2000 473 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Acco03g2000 473 Gene3D - 1 50 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g2000 Acco-ChrAcco03 45862617 45865070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g2000 3 473 Receptor kinase-like Gene Family AT4G05200 52.795 4.69e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco03g2000 PK_Tyr_Ser-Thr 4.4e-47 CL0016