Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1989 ATGGATTTAATCTTTGAACCCCAACAAGGAAAACCCTTCACGATTGAAGTCTGGTACTTCGACACCATTTTGGAGATCAAACAGAAGATTGAAAGATACCAAGGCATTCCCGTCTCAATGCAAACCCTAATCTTCAACGGCCAAACTCTTCCCGACGACGCTGACATCGAGAAATGTGTCCTCCTCGATAGGTCACACGTTCAGCTCCTCATCGCCGCCGATTTCTTCAAGAACCTGCCCGTCAACACGGAGGAGTTTTCTCCGGCTCCGTCCACCGTGAAATTGCACGTCAACGTGAAAACCCCTTCCTCTAATATCCGTACCCTAGAAATGGATGCAAACGACACTGTTTTCAAGCTGAAAGCAAGAGTTCAAGAAATCGAGACTGTACCCATGAATAACAGGCTTGTGGTTCGTTTATTAGGTAAAGAATTACATGACAATCAGATGTTATGGGATTGTGAGATTTCTGAGCATTCTGAGATTGACGTCAGTTTGAGACCATTGCCTGTACCGGTGCCGGTGAAAGGCATCGGGAATAATAATAACAATAATAATGGCGGAGGAGGAGTATCGAGGAAGTTGAGGGTGATGGTTCTGAGCAAGTGTGGGAAGAAGAAGATAGCAATGGAAGTGAATCCAAGTGATAAAGTGGGAGAGTTGAGGAAGGAGCTTCAGAAGCTGAACCAGAGGAATGAACTTCCTCTTCCTTCGGAGGGTTATTTCTTCATTTGTGGACAGAATGTGATGGACGACGAGAAGTCTTTCCGGTGGCACCAAGTTGCTCAGGGCGACACCATTGAGATCTTCAGCGGAAGCGTTACTGGTGGTACATCTTAA 840 0.4595 MDLIFEPQQGKPFTIEVWYFDTILEIKQKIERYQGIPVSMQTLIFNGQTLPDDADIEKCVLLDRSHVQLLIAADFFKNLPVNTEEFSPAPSTVKLHVNVKTPSSNIRTLEMDANDTVFKLKARVQEIETVPMNNRLVVRLLGKELHDNQMLWDCEISEHSEIDVSLRPLPVPVPVKGIGNNNNNNNGGGGVSRKLRVMVLSKCGKKKIAMEVNPSDKVGELRKELQKLNQRNELPLPSEGYFFICGQNVMDDEKSFRWHQVAQGDTIEIFSGSVTGGTS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1989 279 ProSiteProfiles Ubiquitin domain profile. 195 276 IPR000626 GO:0005515
Acco03g1989 279 Gene3D - 194 270 - -
Acco03g1989 279 CDD Ubl_ubiquitin_like 97 164 - -
Acco03g1989 279 Pfam Ubiquitin family 97 168 IPR000626 GO:0005515
Acco03g1989 279 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Acco03g1989 279 SUPERFAMILY Ubiquitin-like 196 270 IPR029071 -
Acco03g1989 279 PRINTS Ubiquitin signature 11 31 IPR019956 -
Acco03g1989 279 PRINTS Ubiquitin signature 32 52 IPR019956 -
Acco03g1989 279 Gene3D - 82 170 - -
Acco03g1989 279 ProSiteProfiles Ubiquitin domain profile. 95 167 IPR000626 GO:0005515
Acco03g1989 279 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 74 - -
Acco03g1989 279 SMART ubq_7 95 167 IPR000626 GO:0005515
Acco03g1989 279 SMART ubq_7 1 72 IPR000626 GO:0005515
Acco03g1989 279 SMART ubq_7 197 272 IPR000626 GO:0005515
Acco03g1989 279 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Acco03g1989 279 FunFam Ubiquitin-like superfamily protein 1 72 - -
Acco03g1989 279 Gene3D - 1 69 - -
Acco03g1989 279 SUPERFAMILY Ubiquitin-like 96 181 IPR029071 -
Acco03g1989 279 SUPERFAMILY Ubiquitin-like 1 72 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1989 Acco-ChrAcco03 45754151 45754990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1989 95 167 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 31.507 2.44e-06 44.7