Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1987 ATGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAAGGTTCGGCCATCCCCCTCAAGCTGTTTCCCAGCAATGATAAGCCTTTGTTGGTCCGGTGGGATTCCCTCTTTGTCCTGGATCTTTTTGTCAAGGAAGGTCTTACCGATGAGAGTTCGGACACTATTGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCGGACCAACAAAGGCTTATCATTGCTGGGAAACAGCTTGAGGGGGATGGCCGAACCTTGGCTGACTATAACATCCAGAAGGAGTCCACTCTTCATCATGTTCTATGTCTCCGTGGTGGCATTCAAATTTTTGCGAAGACCCTTACTGGCCGCAACACTATTATGTTGGAGGTTGAGAGCTCCGACACAATTGACAGGGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCACCTGACCAGAAAAAGGACAAGGAAGGAATCCCACCAGACCAGAAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTCGTGGAGGATTCTGA 585 0.4838 MKSGLLLDVIVSQGSAIPLKLFPSNDKPLLVRWDSLFVLDLFVKEGLTDESSDTIDNVKAKIQDKEGIPPDQQRLIIAGKQLEGDGRTLADYNIQKESTLHHVLCLRGGIQIFAKTLTGRNTIMLEVESSDTIDRVKAKIQDKEGIPPDQKKDKEGIPPDQKRLIFAGKQLEDGRTLADYNIQKESTLHLRGGF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1987 194 Gene3D - 109 151 - -
Acco03g1987 194 FunFam Polyubiquitin-C 110 193 - -
Acco03g1987 194 SUPERFAMILY Ubiquitin-like 50 111 IPR029071 -
Acco03g1987 194 Gene3D - 39 108 - -
Acco03g1987 194 Gene3D - 152 192 - -
Acco03g1987 194 PRINTS Ubiquitin signature 64 84 IPR019956 -
Acco03g1987 194 PRINTS Ubiquitin signature 43 63 IPR019956 -
Acco03g1987 194 ProSiteProfiles Ubiquitin domain profile. 50 109 IPR000626 GO:0005515
Acco03g1987 194 SUPERFAMILY Ubiquitin-like 104 191 IPR029071 -
Acco03g1987 194 ProSiteProfiles Ubiquitin domain profile. 110 190 IPR000626 GO:0005515
Acco03g1987 194 PANTHER UBIQUITIN 152 190 - -
Acco03g1987 194 Pfam Ubiquitin family 153 190 IPR000626 GO:0005515
Acco03g1987 194 Pfam Ubiquitin family 50 104 IPR000626 GO:0005515
Acco03g1987 194 Pfam Ubiquitin family 112 150 IPR000626 GO:0005515
Acco03g1987 194 FunFam Polyubiquitin-C 36 109 - -
Acco03g1987 194 SMART ubq_7 110 193 IPR000626 GO:0005515
Acco03g1987 194 SMART ubq_7 34 105 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1987 Acco-ChrAcco03 45739287 45739978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1987 110 194 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 74.157 9.08e-35 117