Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1986 ATGGATTACGCACTGCGTAGCCGCGCCTGGGAGGTCACCTCATTTGGCTATAAAAAGAGCCCCGAGCCTCCAAGTTCTTTCACATTACGATCTGCTTTATTCGCTACAGGAGAAAACCCTTGCAAACCTAACTACAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCAGATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGCTTACGTGGTGGTATGCAGATCTTTGTCAAGACTCTCACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAACGTGAAAGCCAAGATCCAAGATAAGGAGGGCATCCCTCCAGACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTGGCTGATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGTGCTTCGTCTCCGTGGAGGAATGCAAATTTTTGTCAAGACTCTGACCGGGAAGACCATTACCCTGGAGGTGGAAAGTTCTGACACTATTGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCGGACCAACAAAGGCTTATCTTTGCTGGGAAACAGCTTGAGGATGGCCGAACCTTGGCTGACTATAACATCCAGAAAGAGTCCACCCTTCACCTTGTTCTGCGTCTCCGTGGTGGAATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACCTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCGGACCAGCAAAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGACGCACATTGGCTGATTATAACATTCAAAAGGAGTCCACCCTTCACCTTGTGCTCCGTCTCAGGGGAGGTATGCAAATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTTGAGAGTTCGGATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAAGGAATCCCACCTGACCAGCAAAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCATCTTGTTCTGCGTCTTCGCGGAGGATTCTGA 1284 0.4914 MDYALRSRAWEVTSFGYKKSPEPPSSFTLRSALFATGENPCKPNYKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1986 427 ProSiteProfiles Ubiquitin domain profile. 351 426 IPR000626 GO:0005515
Acco03g1986 427 ProSitePatterns Ubiquitin domain signature. 73 98 IPR019954 -
Acco03g1986 427 ProSiteProfiles Ubiquitin domain profile. 275 350 IPR000626 GO:0005515
Acco03g1986 427 CDD Ubl_ubiquitin 47 122 - -
Acco03g1986 427 SUPERFAMILY Ubiquitin-like 198 274 IPR029071 -
Acco03g1986 427 ProSiteProfiles Ubiquitin domain profile. 47 122 IPR000626 GO:0005515
Acco03g1986 427 CDD Ubl_ubiquitin 199 274 - -
Acco03g1986 427 Gene3D - 199 274 - -
Acco03g1986 427 Gene3D - 275 351 - -
Acco03g1986 427 Gene3D - 41 122 - -
Acco03g1986 427 Gene3D - 123 198 - -
Acco03g1986 427 Gene3D - 352 427 - -
Acco03g1986 427 ProSiteProfiles Ubiquitin domain profile. 199 274 IPR000626 GO:0005515
Acco03g1986 427 SUPERFAMILY Ubiquitin-like 44 122 IPR029071 -
Acco03g1986 427 ProSiteProfiles Ubiquitin domain profile. 123 198 IPR000626 GO:0005515
Acco03g1986 427 FunFam Polyubiquitin 3 47 122 - -
Acco03g1986 427 CDD Ubl_ubiquitin 351 426 - -
Acco03g1986 427 ProSitePatterns Ubiquitin domain signature. 301 326 IPR019954 -
Acco03g1986 427 SMART ubq_7 275 346 IPR000626 GO:0005515
Acco03g1986 427 SMART ubq_7 351 422 IPR000626 GO:0005515
Acco03g1986 427 SMART ubq_7 47 118 IPR000626 GO:0005515
Acco03g1986 427 SMART ubq_7 123 194 IPR000626 GO:0005515
Acco03g1986 427 SMART ubq_7 199 270 IPR000626 GO:0005515
Acco03g1986 427 SUPERFAMILY Ubiquitin-like 349 426 IPR029071 -
Acco03g1986 427 FunFam Polyubiquitin 3 351 426 - -
Acco03g1986 427 SUPERFAMILY Ubiquitin-like 122 198 IPR029071 -
Acco03g1986 427 SUPERFAMILY Ubiquitin-like 274 350 IPR029071 -
Acco03g1986 427 CDD Ubl_ubiquitin 123 198 - -
Acco03g1986 427 ProSitePatterns Ubiquitin domain signature. 149 174 IPR019954 -
Acco03g1986 427 FunFam Polyubiquitin 3 123 198 - -
Acco03g1986 427 CDD Ubl_ubiquitin 275 350 - -
Acco03g1986 427 ProSitePatterns Ubiquitin domain signature. 225 250 IPR019954 -
Acco03g1986 427 PRINTS Ubiquitin signature 57 77 IPR019956 -
Acco03g1986 427 PRINTS Ubiquitin signature 99 120 IPR019956 -
Acco03g1986 427 PRINTS Ubiquitin signature 78 98 IPR019956 -
Acco03g1986 427 FunFam Polyubiquitin 3 275 350 - -
Acco03g1986 427 Pfam Ubiquitin family 201 272 IPR000626 GO:0005515
Acco03g1986 427 Pfam Ubiquitin family 353 424 IPR000626 GO:0005515
Acco03g1986 427 Pfam Ubiquitin family 49 120 IPR000626 GO:0005515
Acco03g1986 427 Pfam Ubiquitin family 277 348 IPR000626 GO:0005515
Acco03g1986 427 Pfam Ubiquitin family 125 196 IPR000626 GO:0005515
Acco03g1986 427 PANTHER UBIQUITIN 199 276 - -
Acco03g1986 427 ProSitePatterns Ubiquitin domain signature. 377 402 IPR019954 -
Acco03g1986 427 FunFam Polyubiquitin 3 199 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1986 Acco-ChrAcco03 45731682 45733764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1986 351 427 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.26e-47 156