Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1975 ATGCGAAACAACCCTTGTAAATCAAAATCCTTCAAGATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTCGAGAGCTCAGATACCATAGACAATGTCAAGACAAAGATTCAAGACAAAGAAGGGATTCCGCCAGACCAGCAGCGATTGATTTTCGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATATTTGTCAAGACACTCACCGGTAAGACCATTACCCTGGAGGTGGAAAGTTCTGACACTATTGATAACGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCACCTGACCAACAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGGACCTTGGCTGACTATAACATCCAGAAGGAGTCCACACTTCATCTTGTTCTACGTCTCCGTGGTGGAATGCAGATTTTTGTGAAGACCCTAACTGGCAAGACTATTACCTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCTGACCAGCAAAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGACGCACATTGGCTGACTATAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATATTTGTGAAGACCTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCGGACACCATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCTCCAGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTTCGTGGAGGACTCTGA 954 0.4738 MRNNPCKSKSFKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1975 317 FunFam Polyubiquitin 3 89 164 - -
Acco03g1975 317 ProSitePatterns Ubiquitin domain signature. 39 64 IPR019954 -
Acco03g1975 317 ProSiteProfiles Ubiquitin domain profile. 13 88 IPR000626 GO:0005515
Acco03g1975 317 PRINTS Ubiquitin signature 120 140 IPR019956 -
Acco03g1975 317 PRINTS Ubiquitin signature 99 119 IPR019956 -
Acco03g1975 317 PRINTS Ubiquitin signature 141 162 IPR019956 -
Acco03g1975 317 SUPERFAMILY Ubiquitin-like 88 164 IPR029071 -
Acco03g1975 317 ProSitePatterns Ubiquitin domain signature. 191 216 IPR019954 -
Acco03g1975 317 ProSiteProfiles Ubiquitin domain profile. 89 164 IPR000626 GO:0005515
Acco03g1975 317 ProSiteProfiles Ubiquitin domain profile. 241 316 IPR000626 GO:0005515
Acco03g1975 317 CDD Ubl_ubiquitin 89 164 - -
Acco03g1975 317 ProSiteProfiles Ubiquitin domain profile. 165 240 IPR000626 GO:0005515
Acco03g1975 317 PANTHER UBIQUITIN 89 168 - -
Acco03g1975 317 CDD Ubl_ubiquitin 241 316 - -
Acco03g1975 317 SUPERFAMILY Ubiquitin-like 11 88 IPR029071 -
Acco03g1975 317 FunFam Polyubiquitin 3 165 240 - -
Acco03g1975 317 SMART ubq_7 241 312 IPR000626 GO:0005515
Acco03g1975 317 SMART ubq_7 13 84 IPR000626 GO:0005515
Acco03g1975 317 SMART ubq_7 89 160 IPR000626 GO:0005515
Acco03g1975 317 SMART ubq_7 165 236 IPR000626 GO:0005515
Acco03g1975 317 Gene3D - 165 240 - -
Acco03g1975 317 Gene3D - 89 164 - -
Acco03g1975 317 Gene3D - 6 88 - -
Acco03g1975 317 Gene3D - 241 317 - -
Acco03g1975 317 Pfam Ubiquitin family 243 314 IPR000626 GO:0005515
Acco03g1975 317 Pfam Ubiquitin family 91 162 IPR000626 GO:0005515
Acco03g1975 317 Pfam Ubiquitin family 15 86 IPR000626 GO:0005515
Acco03g1975 317 Pfam Ubiquitin family 167 238 IPR000626 GO:0005515
Acco03g1975 317 SUPERFAMILY Ubiquitin-like 239 316 IPR029071 -
Acco03g1975 317 SUPERFAMILY Ubiquitin-like 164 240 IPR029071 -
Acco03g1975 317 FunFam Polyubiquitin 3 241 316 - -
Acco03g1975 317 ProSitePatterns Ubiquitin domain signature. 115 140 IPR019954 -
Acco03g1975 317 CDD Ubl_ubiquitin 13 88 - -
Acco03g1975 317 FunFam Polyubiquitin 3 13 88 - -
Acco03g1975 317 CDD Ubl_ubiquitin 165 240 - -
Acco03g1975 317 ProSitePatterns Ubiquitin domain signature. 267 292 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1975 Acco-ChrAcco03 45582171 45584400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1975 13 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 1.17e-47 154