Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1962 ATGGACCCTCAAAATTTTCTATTTTCCCGAGAAAATCCTAGAACTCACTCGTTCTCAACTGCTCCAATTGTCTCTTCAAAACCCAATATCCCCAATGAGATCGCGCAGAAGCCGTCCCCTTCGATTCTAGTGGATCGGTTTAAGGCTTTGCTAAAGGAACGCGAGGATGAATTCAGGGCTTCCTCTGGTGATAAATTGCCGGTGCCACCCCCTAGCACTGAGGAAATTGTGCAGATTTACCAGTTGTTGTTGTCGGGCCTCACTTGCAACTTGAAGCCTATTATTACGGATCTAACCATTATTGCCGAGCTTCAGGCTGAGCATGCCAGAGGCATCGCCGATGCAATTTGCACTCGGATTCTTGAGGTGCCTGCAGATCAAAAGTTGCCGTCCCTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGTCAGGAATATATTAGATACTTCTCTTCATGTCTGCCTGAAATTTTTTGTGAGGCATACAGGCAGGTTCATCCTAAGCTGCATAATGCTATGCGCCATCTCTTTGGCACCTGGTCATCAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTCAACTGCAGTTTTCTCAGGCAATTTATAATCGGTCATCTACCTCTGATCCCCTCAGGGTGTCTGAATCTCGTCAATCAACTCATGGCATACATATCAATCCGAAGTACCTGCAGCAGTTGGAACACTCTAACATGGATAGTGTTGGAGGTGAAAACTTGGAAGCAACAGTAAATTTGGGTCTTGCAAATTTTGGCCGTGGAGCTAGTAAGATGCATCAATCTTTACCCAGCAGGCTTGGGAGATCTTCAGGAATTGGATTTGATAGGCCTCCATCAGCAACTATAGATGAGTGCGCAATTGAAAATTCTTCTAGCAGGATAGTTGAGAGAGATCCTCTTTCTCATCCTGCATTTAATCATGGACTTGGTAAAGCCGGAAGCAGAGGGGAAGAGTTGAGTGGGTGGAAACAAAAACAATATTCTGATGATGGTCGGAACCAGTTTCAGGTTTCTATGTCTTGTAGTCTTAGTAATGGGCATCAGCGTCAAAATCTTAAAGCTTTAATAGATGCATATGGGAGTGATAAAAATGACGAAACCTTCAATAATAAGCCTTTGTTGGTTGAACGTCCGGACATAAATGGTTTAAACAAGGTTGTGTCAACATCATGGCATAACACTGAAGAGGAGGAATTTGATTGGGAAGAGATGAGTCCAACATTAGCAGACCATGGTAGGAATGATGATATCTTACCATCAAGTATTGGTTTCTCCAGGGAAAAGCCTGTTATTAGTGCAGCTACTTCAGAGCGGGATCCTAGGCATAGTTGGTCTAGTCGGTCGCAGCTACCACCAATGGATGATTCCTCTGTTATGGCAGGAGATAAATTTATATATTCAAGTTATGGACGTGGATCACCAGTTCATTCATCTGGATATCAAAATCAGACAAACCAAAGTTTAAGCTCCCGGCCACCTCTTGAAGCTTGGAATATTAGAGGTCAAGCAAGCAATATTCAGATATCCCCTGTCAGTAACATTCCAAATAGTGATAGAAACCAATATGGGACTCGGTCTGCTTTGTCCAGAATGGGTTCCACAATGGAGTCTTATGTGGAGATTTGTCCAACAGTTTTACCAGCATCTCTTGGAATGAGGCCCCCGGTTAATGTTCATGCTATTCGCCCCTCCACCTTAAATTATAGATTTCCCTTGGATCAACATATCAAGAGTCAGTTTGAGCCAAATAATGGTCAAAATAATTCATCATTTTTGGACAGCGTTGAGAACAAGGTTACAGGTTTATCAAAGCTGCATCAGCTGCCAACCCAGCTAGCTGGGCAGATTTTGTTTAACCAGAAAAACTGTGGGCAAGCACCACGACAAGTTTTTCCATCCCCGGATGTGCAAGACAGGTTGCTTAGGTCACAAGCTCCAGCAGCTTTGCAATTTACTCACGGAAGTTTTTTGCTAGGGCATTCTGATGCAATAAGTACAGCCATGCCAAATTCGCTTCCTGCTGTACAATTCCCTACAGTCCAAAACATTGCAAATGAATCTTCTCAATTACAAGGGGGAAACTTGATATCTTTACTTCCTGTCTCCCATCCTGCTATGTCACTAACAATACCTTATTCAAATGCTGGTCCTATCGTGTCAACCCAACAACCAGGCGGTGCATTTTCTGGTTTAATTAATTCACTTATGGCCCAAGGTTTGATATCAGTAACTAATCAACCTCCCGAACAGGACTCGGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTTTTGAGTCTGCAATCAGTGCCTTATATGGCGATCTTCCCAGGCAATGCACTTCCTGTGGCCTTCGATTCAAGTGCCAACAGGAGCACAGTAGTCATATGGATTGGCATGTTACTAAGAACAGGATGTCTAAAAACCACAAGCAGAAGTACTCTCGCAAGTGGTTTGTGAGTGAGAGTATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGCCCCTGTTTTTTTGCCTAGTGAGATTTTAGAGGAGGCAAAAGATGATGAAGAGTTGGCTGTGCCAGCTGACCAGGATCAGAATACATGTGCATTATGTGGTGAGCCTTTTGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTGTATATCAATGCACCCAAGGGAACAGTGGCAGGCATGGATAGGTTGCAATTAGGCCCCATTGTTCATGCTAAGTGCAGATCTGAGTCTAACGTTGCCCCATCTGAAGATAATCGACTGGATGAAAGGGATTTATTGGGCAAACACTCAATAACTTCTTTATCTGAGTATAGGGAACAGATGAGGAGGATATTCAACGAAAACGGAGGCGAAGTTAACCAGCATGGATCAGTTTTGTCACATGTTTCTTGTAACGTAACAGAGTTGTTACCAGGTGCACAACAATACACAGCGATGATCCGCCATATTAGCTGTTATCTGTCTGGAGGTTCATAA 3027 0.4344 MDPQNFLFSRENPRTHSFSTAPIVSSKPNIPNEIAQKPSPSILVDRFKALLKEREDEFRASSGDKLPVPPPSTEEIVQIYQLLLSGLTCNLKPIITDLTIIAELQAEHARGIADAICTRILEVPADQKLPSLYLLDSIVKNVGQEYIRYFSSCLPEIFCEAYRQVHPKLHNAMRHLFGTWSSVFPPSVLRKIEAQLQFSQAIYNRSSTSDPLRVSESRQSTHGIHINPKYLQQLEHSNMDSVGGENLEATVNLGLANFGRGASKMHQSLPSRLGRSSGIGFDRPPSATIDECAIENSSSRIVERDPLSHPAFNHGLGKAGSRGEELSGWKQKQYSDDGRNQFQVSMSCSLSNGHQRQNLKALIDAYGSDKNDETFNNKPLLVERPDINGLNKVVSTSWHNTEEEEFDWEEMSPTLADHGRNDDILPSSIGFSREKPVISAATSERDPRHSWSSRSQLPPMDDSSVMAGDKFIYSSYGRGSPVHSSGYQNQTNQSLSSRPPLEAWNIRGQASNIQISPVSNIPNSDRNQYGTRSALSRMGSTMESYVEICPTVLPASLGMRPPVNVHAIRPSTLNYRFPLDQHIKSQFEPNNGQNNSSFLDSVENKVTGLSKLHQLPTQLAGQILFNQKNCGQAPRQVFPSPDVQDRLLRSQAPAALQFTHGSFLLGHSDAISTAMPNSLPAVQFPTVQNIANESSQLQGGNLISLLPVSHPAMSLTIPYSNAGPIVSTQQPGGAFSGLINSLMAQGLISVTNQPPEQDSVGTEFNPDVLKIRFESAISALYGDLPRQCTSCGLRFKCQQEHSSHMDWHVTKNRMSKNHKQKYSRKWFVSESMWLSGAEALGTESAPVFLPSEILEEAKDDEELAVPADQDQNTCALCGEPFDEFYSDETEEWMYRGAVYINAPKGTVAGMDRLQLGPIVHAKCRSESNVAPSEDNRLDERDLLGKHSITSLSEYREQMRRIFNENGGEVNQHGSVLSHVSCNVTELLPGAQQYTAMIRHISCYLSGGS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1962 1008 MobiDBLite consensus disorder prediction 266 287 - -
Acco03g1962 1008 ProSitePatterns Zinc finger C2H2 type domain signature. 788 808 IPR013087 -
Acco03g1962 1008 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Acco03g1962 1008 Pfam CID domain 94 191 IPR006569 -
Acco03g1962 1008 SUPERFAMILY ENTH/VHS domain 71 199 IPR008942 -
Acco03g1962 1008 Gene3D - 70 198 IPR008942 -
Acco03g1962 1008 MobiDBLite consensus disorder prediction 438 463 - -
Acco03g1962 1008 CDD CID_Pcf11 80 197 IPR047415 -
Acco03g1962 1008 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 69 933 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Acco03g1962 1008 SMART 558neu5 75 197 IPR006569 -
Acco03g1962 1008 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1962 Acco-ChrAcco03 45478359 45486202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1962 726 934 C2H2 Transcription Factor Family AT4G04885 74.163 6.91e-103 339